PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 327aa MW: 37392.2 Da PI: 8.978

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.2369s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	79.1	3.2e-25	19	68	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 + +++s +++++s+R+++i+KKA+EL++LCd+e++vi+++++g+l+++++ Araha.2369s0003.1.p 19 SCSSYSLASTSLSNRLETIFKKASELCTLCDIEACVIYYGPDGELKTWPK 68 6789********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.001	1	69	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51257	5	1	20	No hit	No description
Pfam	PF00319	4.3E-14	27	66	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.34E-18	27	94	No hit	No description
PROSITE profile	PS50066	9.699	28	70	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.79E-15	28	102	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MTIRSLPSSS CCSSSSSSSC SSYSLASTSL SNRLETIFKK ASELCTLCDI EACVIYYGPD 60 GELKTWPKEK EKVRDMALKY SQLNEALRRK KRVNLYDFLN KKKNKGLKNP NKKRKTSLKK 120 VNELKYPISD HYSPDQISKL IQSLELNVSK VQERLRFVES QKHKETKPDR QSLASSSLNH 180 QTQSLKPSQF SLFMYNHGDN TLSQIPVSAS NFNPALLQES GLMKQELCGY DQNMFMSDIT 240 NNKFQHPCVS NTEHYSVVPE PVNNYGLNQL MQKEFYGCDQ KLSNINSNNF QHAFVSNTQH 300 YSAVQESVNN YGLMPHELYG YDQNMFT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	114	KKKNKGLKNPNKKRK
2	101	113	KKNKGLKNPNKKR
3	106	114	LKNPNKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.2369s0003.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB010072	0.0	AB010072.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6.
GenBank	BT030016	0.0	BT030016.1 Arabidopsis thaliana At5g41200 mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002870726.2	0.0	agamous-like MADS-box protein AGL75
Swissprot	Q9FLL0	1e-148	AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBL	D7MJH9	0.0	D7MJH9_ARALL; Uncharacterized protein
STRING	scaffold_704060.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41200.1	1e-146	AGAMOUS-like 75

Link Out ? help Back to Top
Phytozome	Araha.2369s0003.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]