PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.23368s0027.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 478aa    MW: 51892.8 Da    PI: 9.6007
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.23368s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.0001197117323
                           ETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                           C+ C+k F r  nL+ H r H
  Araha.23368s0027.1.p  97 CEVCNKGFQREQNLQLHRRGH 117
                           *******************88 PP
2zf-C2H212.80.00035171193123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC +C+k++  +s+ k H +t+
  Araha.23368s0027.1.p 171 WKCDKCSKRYAVQSDWKAHSKTC 193
                           58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.97E-794117No hitNo description
Gene3DG3DSA:3.30.160.608.9E-694117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9795117IPR007087Zinc finger, C2H2
SMARTSM003550.02595117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SMARTSM00355140136166IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-5159192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.97E-7166191No hitNo description
SMARTSM00355140171191IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MDLCSFSKIR PAEKMSSSYN TIASSSAQTF LLSGAASGAR PNNFNREEAA RTMIQQPNSS  60
VTPPPKKRRN QPGNPNPDAE VIALSPKTIM ATNRFLCEVC NKGFQREQNL QLHRRGHNLP  120
WKLKQKSNKE VRRKVYLCPE ASCVHHDPAR ALGDLTGIKK HYYRKHGEKK WKCDKCSKRY  180
AVQSDWKAHS KTCGTKEYRC DCGTIFSRRD SYITHRAFCD ALIQESARNP TVSFTAMAAA  240
GGGGARHGFY GGASSAHSHN LFGNNSNSGF TPLAAGYNLN RSSSDKFEDF VPQSTNPNPG  300
PTNFLMQCSP NQGLLAQNNQ SLMNQHGLIS LGDNTNHNLF NIGYFQDTKN SDQIGVPSLF  360
TNGADNNDPS AFLRGLTSSS SPNVVVNDFG DSDNGNLQGL MNSLTATTDQ QGRPTSLLDL  420
HFGNNLSMGG ADRLTLDFLG VNGGIVSTVN GRGGRGGGPP LDAEMKFSHP NHPFGKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-34167233369Zinc finger protein JACKDAW
5b3h_F6e-34167233369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00142DAPTransfer from AT1G14580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.23368s0027.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0910410.0AY091041.1 Arabidopsis thaliana putative zinc finger protein (At1g14580) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869197.10.0protein indeterminate-domain 6, chloroplastic isoform X1
SwissprotQ8RWX70.0IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLD7KBM30.0D7KBM3_ARALL; T5E21.8
STRINGfgenesh1_pm.C_scaffold_10012360.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36781759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.20.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]