PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2296s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 310aa    MW: 35286.8 Da    PI: 6.6108
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2296s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13113164155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P +   ++++ + a+i+  A++++k+L+
  Araha.2296s0007.1.p 113 QRMTHIAVERNRRKQMNEYLAVLRSLMPLS---YAQRGDQASIVGGAINFVKELE 164
                          79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.74E-12111168No hitNo description
Gene3DG3DSA:4.10.280.101.3E-12112166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.675112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-16112176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-11113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-9118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ QEVLAQDTKN NIDKLGQEQS FVEQGKEEDR  60
QWRDYNQYPL LIPSLEEELG LPAIDVENHP PPQQRRKRRR TRNCKNKEEI ENQRMTHIAV  120
ERNRRKQMNE YLAVLRSLMP LSYAQRGDQA SIVGGAINFV KELEHILQSM GPKRTRTTST  180
THDPEGADPS TSSLVGPFSD FFSFPQYSTK SSSEVPESSS SPAEIEVTVA ESHANIKILV  240
KKKPRQLLKL IASLQNLRLT LLHLNVTTTL HNSILYSISV RVEEGSQLNT VDDIATALNH  300
TIRRIQEES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19399QRRKRRR
29599RKRRR
395100RKRRRT
4113124RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2296s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0882340.0AY088234.1 Arabidopsis thaliana clone 4596 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893233.10.0transcription factor bHLH94
SwissprotQ9SK910.0BH094_ARATH; Transcription factor bHLH94
TrEMBLD7KLS20.0D7KLS2_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_10020570.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-174bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]