PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2280s0002.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 440aa    MW: 49244.3 Da    PI: 6.1184
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2280s0002.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.59.1e-11151193342
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeN 42 
                          ++k  rr+++NReAAr+sR+RKka++++Le+   + ++Le+e 
  Araha.2280s0002.2.p 151 QSKTLRRLAQNREAARKSRLRKKAYVQQLENsriRLAQLEEEL 193
                          57899************************98333455555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.0E-6149220IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.186151195IPR004827Basic-leucine zipper domain
PfamPF001707.1E-8152193IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.43E-7153196No hitNo description
CDDcd147081.92E-21153201No hitNo description
Gene3DG3DSA:1.20.5.1701.0E-7154198No hitNo description
PROSITE patternPS000360156171IPR004827Basic-leucine zipper domain
PfamPF141447.3E-27238311IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MQSSFKTVPF NPDFYSQSSF FFRGDSCLEE FHQPVYGFHH EEAIDLSPNV TIASANLHYT  60
TFDTVMECGG GGGLRERLEG EEECLDTGQL VYQKGTRLVG GEVNSSWCDS VSAMADNSQH  120
TDTSTDIDTD DKTQLNGVHQ GMLLATNCSD QSKTLRRLAQ NREAARKSRL RKKAYVQQLE  180
NSRIRLAQLE EELKRARQQG SLVESGVSVD HSHLAAGNGA FSFELEYTRW KEEHQKLIND  240
LRSGVNSLLG DNDLRVLVDA VMSHYDEIFR LKGIGTKVDV FHMLSGMWKT PAERFFMWLG  300
GFRSSELLKI LGNHVDPLTD QQLIGICNLQ QSSQQAEDAL SQGMEALQQS LLETLSSASM  360
GPNSSANVAD YMGHMAMAMG KLGTLENFLR QADLLRQQTL QQLHRILTTR QAARAFLVIH  420
DYISRLRALS SLWLARPRD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269|PubMed:19395638, ECO:0000269|PubMed:19395639, ECO:0000269|PubMed:9990857}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2280s0002.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1182860.0AK118286.1 Arabidopsis thaliana At1g68640 mRNA for putative bZip transcription factor PERIANTHIA (PAN) / AtbZip46, complete cds, clone: RAFL19-57-M21.
GenBankBT0085860.0BT008586.1 Arabidopsis thaliana clone U50929 putative bZIP transcription factor, PERIANTHIA (At1g68640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889621.10.0transcription factor PERIANTHIA isoform X2
SwissprotQ9SX270.0PAN_ARATH; Transcription factor PERIANTHIA
TrEMBLD7KWE60.0D7KWE6_ARALL; Transcription factor perianthia
STRINGfgenesh2_kg.2__1120__AT1G68640.10.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.10.0bZIP family protein
Publications ? help Back to Top
  1. Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU
    The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control.
    Front Plant Sci, 2011. 2: p. 79
    [PMID:22645551]
  2. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  3. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. de Luis Balaguer MA, et al.
    Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640
    [PMID:28827319]