PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.22227s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | G2-like | ||||||||
Protein Properties | Length: 211aa MW: 24154.9 Da PI: 5.6229 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.5 | 1.7e-29 | 15 | 66 | 2 | 53 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 prlrW+++LH++Fv+aveqLGG+++AtPk +l+lm+v gLt++hvkSHLQk+ Araha.22227s0001.1.p 15 PRLRWNSDLHNSFVQAVEQLGGENRATPKMVLQLMDVRGLTISHVKSHLQKH 66 8*************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-27 | 11 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.839 | 11 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.23E-14 | 13 | 70 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.8E-22 | 15 | 66 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.3E-6 | 16 | 66 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MKNSIVRSYV RSKVPRLRWN SDLHNSFVQA VEQLGGENRA TPKMVLQLMD VRGLTISHVK 60 SHLQKHIQSL AEEILAKRSV RVTGQVTWWQ FQQYLHNYQR LRGNANFFQN HQRQEEEMYE 120 KIITFGESSN ETKEGPSDYF TCKSLYESSR APQNKTRDDD ENGDVVVAID DDGNVVGEHD 180 DDDVTLSLNS IKVSKEEEEL SLELTLGLKA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-16 | 16 | 66 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-16 | 16 | 66 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-16 | 16 | 66 | 3 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-16 | 16 | 66 | 3 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-16 | 16 | 66 | 3 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-16 | 16 | 66 | 3 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-16 | 16 | 66 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-16 | 16 | 66 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-16 | 16 | 66 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-16 | 16 | 66 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-16 | 16 | 66 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-16 | 16 | 66 | 4 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.22227s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF074021 | 4e-60 | AF074021.1 Arabidopsis thaliana BAC F4H6, chromosome IV, complete sequence. | |||
GenBank | AL161501 | 4e-60 | AL161501.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 13. | |||
GenBank | CP002687 | 4e-60 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020878875.1 | 1e-132 | protein PHOSPHATE STARVATION RESPONSE 1 | ||||
TrEMBL | A0A1P8B8R6 | 1e-124 | A0A1P8B8R6_ARATH; Myb-like DNA-binding domain protein | ||||
STRING | Bostr.7199s0006.1.p | 1e-122 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM363 | 28 | 184 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04580.1 | 2e-32 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.22227s0001.1.p |