PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.2163s0004.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 329aa MW: 36367.4 Da PI: 4.7831

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.2163s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.2	2.2e-11	174	221	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RR+++N++f L ++l + +++K +K++iL A++ +++L Araha.2163s0004.1.p 174 TKACREKLRREKLNDKFMDLSSVLEPG---RNPKTDKSAILDDAIRVVNQL 221 6789********************9...9**************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.23E-13	163	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.73E-9	168	222	No hit	No description
PROSITE profile	PS50888	13.186	170	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-8	174	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-10	176	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-12	177	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MYPSIDDDDD LLAALCFDQS NGVEDPYAYI QTNEDNIFQD FGSCGLNLQS QQQQSCNIGA 60 QFDSFSGNLE QVCSFRGENN GVVYSSSIGS AQLDLAASFS GVLQQETHQV CGFRGQNDDS 120 AANHLEQEPG QVCSGVVEIN SSSSVGGVKD ELEHVEDECS RKRGRNGSCN KPGTKACREK 180 LRREKLNDKF MDLSSVLEPG RNPKTDKSAI LDDAIRVVNQ LRGEAHELKE TNRKLLEEIK 240 SLKAEKNELR EEKLVLKADK EKMVQQLKSM AFPSPGFMPS QHPAAFHPNN MPVYSGYSYY 300 PPNMPMWSPL PPADRDTSRD HKNLPPVA*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00372	DAP	Transfer from AT3G23210	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.2163s0004.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488573	0.0	AF488573.1 Arabidopsis thaliana clone bHLH034 putative bHLH transcription factor mRNA, complete cds.
GenBank	AY099674	0.0	AY099674.1 Arabidopsis thaliana unknown protein (At3g23210) mRNA, complete cds.
GenBank	AY128853	0.0	AY128853.1 Arabidopsis thaliana unknown protein (At3g23210) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020889077.1	0.0	transcription factor bHLH34
Swissprot	Q9LTC7	0.0	BH034_ARATH; Transcription factor bHLH34
TrEMBL	D7L392	0.0	D7L392_ARALL; Basic helix-loop-helix family protein
STRING	fgenesh2_kg.3__2536__AT3G23210.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4026	26	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23210.1	1e-172	bHLH family protein

Link Out ? help Back to Top
Phytozome	Araha.2163s0004.1.p

Publications ? help Back to Top
Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]