PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.21362s0002.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

FAR1

Protein Properties

Length: 810aa MW: 92477.8 Da PI: 6.5078

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.21362s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.9	4e-24	57	142	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +++++s++skr+g++++ + Cs+ g+++e++ + ++r+ +tgCka l++k+++d+kw+++++++eHnHe++ Araha.21362s0002.1.p 57 FYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFGTKREKSAA----INPRSCPKTGCKAGLHMKRKEDEKWVIYNFVKEHNHEIC 141 9*************************************998877....99*********************************99 PP FAR1 91 p 91 p Araha.21362s0002.1.p 142 P 142 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-21	57	142	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-22	224	316	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.484	504	540	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.8E-7	504	539	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.3E-7	515	542	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 810 aa Download sequence Send to blast
MDVEDVEIDL LTRSGNVDVF CEASTSGNVA RSLEHFATVS ELRNGMEFES KEAAYYFYRE 60 YARSVGFGIT IKASRRSKRS GKFIDVKIAC SRFGTKREKS AAINPRSCPK TGCKAGLHMK 120 RKEDEKWVIY NFVKEHNHEI CPDDFYVSIR GKNKPVGVLA NQKKGLQLAL EEEDLKLLLE 180 HFMDMQDKQP GFFYAVDFDS DKHVRNVFWL DAKAKHDYCS FSDVVLFDTF YVRNGYRIPF 240 APFIGVSHHR HYVLLGCALI GEESESTYSW VFWTWLKAVG GQAPGVMITD QDKLLGAIVV 300 EVFPDARHIF CLWSVLSKIP EMLNPFVSQD DGFMESFRNC VHSSWTDEQF ERSWSNMIGK 360 FELNENEWVQ LLFRDRKKWV PHYFHGICLA GLSGPERSGS IASQFEKYMN SEATFKDFFE 420 LYMKFLQYRC DVEAKDDLES QSKQPTLRSS LAFEKQLSLI YTDAAFKKFQ AEVPGVVSCQ 480 LQKVREEGTT AIFRIEDFEE RQNFFVALNI ELLDACCSCH LFEYQGFLCK HVILVLQSAD 540 VSCIPSQYIL KRWSKKGNNK EDKNDKCATI HNRLARFDDL CRRFVKLGVV ASLSDEAYKT 600 ALNLLEETMK HCASMDNSPK FPSEPDKLMT GGSIGLENEG MLDCASKLSK KKKIQKKRKV 660 YCGPEDATNR SEELRQETEQ VSSRAPTFEN CYIPQENTEE LELGSRATTL GVYYSTQQTI 720 QGFSSVSFIQ DGYYGHPPTI QAMGNMHLIH GRMSQYETQP SMQGAFQGQT GFRGSAIRGC 780 YDIEETLHDM TMESSQFQGS GPSHPSDHR*

Sequence ? help Back to Top

Protein Sequence Length: 810 aa Download sequence Send to blast

MDVEDVEIDL LTRSGNVDVF CEASTSGNVA RSLEHFATVS ELRNGMEFES KEAAYYFYRE  60
YARSVGFGIT IKASRRSKRS GKFIDVKIAC SRFGTKREKS AAINPRSCPK TGCKAGLHMK  120
RKEDEKWVIY NFVKEHNHEI CPDDFYVSIR GKNKPVGVLA NQKKGLQLAL EEEDLKLLLE  180
HFMDMQDKQP GFFYAVDFDS DKHVRNVFWL DAKAKHDYCS FSDVVLFDTF YVRNGYRIPF  240
APFIGVSHHR HYVLLGCALI GEESESTYSW VFWTWLKAVG GQAPGVMITD QDKLLGAIVV  300
EVFPDARHIF CLWSVLSKIP EMLNPFVSQD DGFMESFRNC VHSSWTDEQF ERSWSNMIGK  360
FELNENEWVQ LLFRDRKKWV PHYFHGICLA GLSGPERSGS IASQFEKYMN SEATFKDFFE  420
LYMKFLQYRC DVEAKDDLES QSKQPTLRSS LAFEKQLSLI YTDAAFKKFQ AEVPGVVSCQ  480
LQKVREEGTT AIFRIEDFEE RQNFFVALNI ELLDACCSCH LFEYQGFLCK HVILVLQSAD  540
VSCIPSQYIL KRWSKKGNNK EDKNDKCATI HNRLARFDDL CRRFVKLGVV ASLSDEAYKT  600
ALNLLEETMK HCASMDNSPK FPSEPDKLMT GGSIGLENEG MLDCASKLSK KKKIQKKRKV  660
YCGPEDATNR SEELRQETEQ VSSRAPTFEN CYIPQENTEE LELGSRATTL GVYYSTQQTI  720
QGFSSVSFIQ DGYYGHPPTI QAMGNMHLIH GRMSQYETQP SMQGAFQGQT GFRGSAIRGC  780
YDIEETLHDM TMESSQFQGS GPSHPSDHR*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.21362s0002.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228730	0.0	AK228730.1 Arabidopsis thaliana mRNA for Mutator-like transposase, complete cds, clone: RAFL16-06-P03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020884465.1	0.0	protein FAR1-RELATED SEQUENCE 2
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A178VYC3	0.0	A0A178VYC3_ARATH; FRS2
STRING	AT2G32250.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	0.0	FAR1-related sequence 2

Link Out ? help Back to Top
Phytozome	Araha.21362s0002.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]