PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.2135s0004.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 291aa MW: 33911.7 Da PI: 8.4482

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.2135s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	51.1	1.7e-16	10	52	2	44
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 ri n+ r +t+ kR++ + KKA E S+LC+++ ++i++++t Araha.2135s0004.1.p 10 RIANDKTRITTYKKRKASLYKKALEFSTLCGVQTCLIVYGPTK 52 89**************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.9E-12	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.619	1	51	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.50E-24	2	81	No hit	No description
PRINTS	PR00404	1.5E-6	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.97E-17	6	86	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.8E-15	10	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-6	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-6	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MAPKIVDLQR IANDKTRITT YKKRKASLYK KALEFSTLCG VQTCLIVYGP TKATDEVVPE 60 PEIWPRDETN VRDIIRKYKD TVSTSCRKET NVETFVNDVG KANEVETKKK VKREIKYRSW 120 EEKLDKCSRE QLHEIFCAVD KKLHEAVMRQ DLSMYRVHHQ AMDTPIPQNF MDQHFMPQYF 180 HEQPQFQGFP NNMGFSLISP HDGQIQMDPN LMENWRDLAL TQSLMMSKGN DGTQLMQMQA 240 QPYYNREPIV PRSSGFNVNP FTGYQVPFNI PWRLSGNHVE DWELSGKKQI *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.2135s0004.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB016885	0.0	AB016885.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19M22.
GenBank	AB493798	0.0	AB493798.1 Arabidopsis thaliana At5g58890 gene for hypothetical protein, partial cds, clone: RAAt5g58890.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002864598.1	0.0	agamous-like MADS-box protein AGL82
Swissprot	Q9FIM0	0.0	AGL82_ARATH; Agamous-like MADS-box protein AGL82
TrEMBL	D7MR43	0.0	D7MR43_ARALL; MADS-box family protein
STRING	scaffold_802501.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5948	19	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	0.0	AGAMOUS-like 82

Link Out ? help Back to Top
Phytozome	Araha.2135s0004.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]