PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.21152s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 302aa    MW: 34905.6 Da    PI: 9.5663
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.21152s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-13119169154
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           +r++h ++Er+RR+++N  ++ Lr+++P++   + ++ + a+i+  A++++k L
  Araha.21152s0005.1.p 119 QRMTHIAVERNRRRQMNVHLNSLRSIIPPS---YIQRGDQASIVGGAIDFVKIL 169
                           79****************************...9***************99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.67E-9117174No hitNo description
PROSITE profilePS5088814.729118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15118185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-10119169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-12119183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MLQQSEDPSP FLSFKDPSFL ALLSLQTLEK PWELENYLPH EVPEFHSPIH SETNHYYHNP  60
PLEGANEAIS SKELPFNPLE NANPRRKRKN NNLATLMTRE KRKRRRTKPT KNIEEIESQR  120
MTHIAVERNR RRQMNVHLNS LRSIIPPSYI QRGDQASIVG GAIDFVKILE QHLQSLEAQK  180
RSQQSDDNKE QILELRDISS NKLRASSKEE QSSKLKIEAT VIESHVNLKI QCRRKEGQLL  240
RSIILLEKLR FTVLHLNITS PTNTSVSYSF NLKMEDDCNL GSADEITAAI RQIFDRRQLI  300
D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
186105KRKNNNLATLMTREKRKRRR
2100105KRKRRR
3101105RKRRR
4101106RKRRRT
5101108RKRRRTKP
6119130RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.21152s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6784340.0AB678434.1 Arabidopsis thaliana mRNA for basic helix-loop-helix DNA-binding superfamily protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880266.10.0transcription factor bHLH70
SwissprotO810370.0BH070_ARATH; Transcription factor bHLH70
TrEMBLD7LF900.0D7LF90_ARALL; Uncharacterized protein
STRINGscaffold_403653.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]