PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.19807s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | G2-like | ||||||||
Protein Properties | Length: 119aa MW: 13853.8 Da PI: 9.0685 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 25.8 | 2.4e-08 | 1 | 20 | 36 | 55 |
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+v +Lt+++vkSHLQ+YR Araha.19807s0001.1.p 1 MGVRDLTMSQVKSHLQMYRN 20 99*****************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-7 | 1 | 21 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MGVRDLTMSQ VKSHLQMYRN KKEANSIQER RMIRQMKLRQ SQQYLQIYER ARNVTQDFQN 60 HQRVQLDITE KVTPILEPSN KPMEVGLNEN RDNDVVVVGD GAICEEGLSF ELTLGRKY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.19807s0001.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020879380.1 | 2e-68 | transcription repressor KAN1 | ||||
TrEMBL | D7M1R7 | 2e-56 | D7M1R7_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_6002974 | 3e-57 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM363 | 28 | 184 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04580.1 | 5e-36 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.19807s0001.1.p |