PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.19790s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 263aa    MW: 29937.7 Da    PI: 6.4053
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.19790s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.96.4e-12311131299
                           HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                           ++++ ++p +f+++  g    +  ++   ++ +sW++ l  ++ +++ +++++ W+eFv++n+L  +D + F++d  ++ +l v++f++
  Araha.19790s0003.1.p  31 SKSMRIIPEEFVRSTPGA--FEHRVVYSVRWENSWQLWL--ERDKNElFMIEEDWNEFVDDNHLGPNDNLFFRHD--ETMNLEVQIFKN 113
                           3355699*****999655..333588888**********..8888888*************************65..566669999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-1613114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-1615115IPR015300DNA-binding pseudobarrel domain
CDDcd100172.04E-1317112No hitNo description
SMARTSM010194.8E-1919114IPR003340B3 DNA binding domain
PROSITE profilePS5086311.32120114IPR003340B3 DNA binding domain
PfamPF023625.9E-1031113IPR003340B3 DNA binding domain
SuperFamilySSF1019361.55E-7178249IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0047185262IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-5197254IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.372223258IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MLPKGAIDKI QANVSKPCFW KSLSPGQNWK SKSMRIIPEE FVRSTPGAFE HRVVYSVRWE  60
NSWQLWLERD KNELFMIEED WNEFVDDNHL GPNDNLFFRH DETMNLEVQI FKNNGDEIID  120
VPLEVEPETE PFHPTPKKPH RETTPASASV FGGSANGGTN SRGRQRSNDV KNPERYLLNP  180
ENPYFVQAVT KRNDVLSTIT YLLPGGKKEE GETKIYNGQP CFSGWSVLCR RHNLKIGDSV  240
VCELERSGGL VAAVRVHLVN KD*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00528DAPTransfer from AT5G25475Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.19790s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1759280.0AK175928.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-59-D02.
GenBankAY0871560.0AY087156.1 Arabidopsis thaliana clone 32341 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020876196.10.0B3 domain-containing protein At5g25475
RefseqXP_020876197.10.0B3 domain-containing protein At5g25475
RefseqXP_020876198.10.0B3 domain-containing protein At5g25475
RefseqXP_020876199.10.0B3 domain-containing protein At5g25475
SwissprotQ680D91e-169Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLD7M3Z61e-180D7M3Z6_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__2539__AT5G25475.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.31e-172B3 family protein