PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.19790s0002.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Protein Properties

Length: 298aa MW: 34165.1 Da PI: 8.4426

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.19790s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.4	7.8e-11	51	127	17	98
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++p +f+ + + +++ ++g+sW++ l ++ ++ +++++ W eFv++n+L +D + Fk+d+++ f l v++f+ Araha.19790s0002.1.p 51 SFPAEFVISTPR--SLEHRVVFSVRWGNSWQLWL--EREKEDlFMIEEDWDEFVDDNHLGPNDNLFFKHDNTM-F-LEVQIFK 127 567777766533..344579999*********..8888888***********************87644.4.5888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.4E-13	16	130	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.67E-10	17	127	No hit	No description
SMART	SM01019	7.3E-11	19	129	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.068	35	129	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.2E-13	45	129	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	5.0E-9	51	127	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	4.9E-12	192	284	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.3E-8	193	286	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	7.6E-10	199	295	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	6.245	257	291	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MLPKSVTDKI QENVSKPCFW KSLSPGQNWK SKSMYRLLLS TVMIYGFMKR SFPAEFVIST 60 PRSLEHRVVF SVRWGNSWQL WLEREKEDLF MIEEDWDEFV DDNHLGPNDN LFFKHDNTMF 120 LEVQIFKDNG KEIIDAPLEV EPETKQLHPT TPKNSYKETT PASTSASASE FSENGRARQS 180 CADVKNPELY LLNPKNPYFV KTLSKRNDVL YVPKPVIKKY GLKFGPTHSP MHYLLPGDKI 240 KGLTKLYGGG DAPCFNGWVG LCRKYNLKIG DSVVCELERS GDLVTAVRVH FINENMR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.19790s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ446982	0.0	DQ446982.1 Arabidopsis thaliana clone pENTR221-At5g25470 unknown (At5g25470) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002874263.1	0.0	B3 domain-containing protein At5g25470
Refseq	XP_020876200.1	0.0	B3 domain-containing protein At5g25470
Refseq	XP_020876201.1	0.0	B3 domain-containing protein At5g25470
Swissprot	Q1PDT6	1e-158	Y5547_ARATH; B3 domain-containing protein At5g25470
TrEMBL	D7M3Z5	0.0	D7M3Z5_ARALL; Predicted protein
STRING	Al_scaffold_0006_2457	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4491	16	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25470.2	1e-155	B3 family protein

Link Out ? help Back to Top
Phytozome	Araha.19790s0002.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]