PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1975s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 357aa    MW: 40588.5 Da    PI: 4.9575
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1975s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.81.1e-149752797
                         ---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3 27 ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                         +++++ +kt++l+ + g sW+v    + + +++ +++GW +Fv++n L +gD+++F ++g++ f   v+++
  Araha.1975s0004.1.p  9 QLPSRLPKTVILRGPGGCSWNVAT--TINESEVHFSQGWAKFVEDNTLSDGDILTFVYNGDHIF--EVSIY 75
                         45677899****************..888888999***********************999888..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.974178IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-17176IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-15276IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0064778IPR003340B3 DNA binding domain
PfamPF023626.0E-12875IPR003340B3 DNA binding domain
CDDcd100175.48E-131076No hitNo description
SuperFamilySSF1019362.94E-5257343IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.24262354IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.3E-4271342IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MLPIAYYDQL PSRLPKTVIL RGPGGCSWNV ATTINESEVH FSQGWAKFVE DNTLSDGDIL  60
TFVYNGDHIF EVSIYRGYDA SKEISAVTEL EEDKEDSVLS LSSEDEDTCS QSVMKNTIPE  120
GRDKGKSKVE VVEDSDDEED SVYSASGEET ETDTDSEFQV AKTTIPKSKK KGKKKEQVVE  180
SSDEDSDSDS DYIETFGQLD IEENSNSEED SSYAPDDEGT STCVKPKVAN LKRKEAAKKR  240
KKVEPKIKNP ETYLDDPKNI HFETNVKNRL YELLVHAQLV KDYCLKFGDH VYYIDRIGKL  300
KAKTAKWKDQ RVCIKKWMRI CDRNKLKKED RILCELLRKG TFVYAIKLHI IRGKNL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237241KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1975s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937170.0AB493717.1 Arabidopsis thaliana At4g34400 mRNA for hypothetical protein, partial cds, clone: RAAt4g34400.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020873147.10.0B3 domain-containing protein At4g34400
RefseqXP_020873148.10.0B3 domain-containing protein At4g34400
RefseqXP_020873149.10.0B3 domain-containing protein At4g34400
SwissprotQ9SZ051e-173Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBLD7MF200.0D7MF20_ARALL; Uncharacterized protein
STRINGscaffold_700694.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.11e-144B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]