PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.1947s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 1391aa MW: 157320 Da PI: 5.2795 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.7 | 1e-27 | 1208 | 1268 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK + gs+fprsYYrCt + gC+++k+v+rs++dp+++ itY +eHnh+ Araha.1947s0004.1.p 1208 VDLWTWRKYGQKYILGSNFPRSYYRCTDRfteGCKATKQVQRSDTDPNMFAITYISEHNHP 1268 599************************98888****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52200 | 3.01E-7 | 11 | 105 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
SuperFamily | SSF52540 | 6.19E-52 | 145 | 396 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00931 | 4.7E-28 | 167 | 406 | IPR002182 | NB-ARC |
Gene3D | G3DSA:3.40.50.300 | 3.9E-11 | 169 | 289 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PRINTS | PR00364 | 1.3E-23 | 171 | 186 | No hit | No description |
PRINTS | PR00364 | 1.3E-23 | 243 | 257 | No hit | No description |
PRINTS | PR00364 | 1.3E-23 | 336 | 350 | No hit | No description |
SuperFamily | SSF46785 | 1.17E-11 | 373 | 474 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF52058 | 1.9E-34 | 509 | 858 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 1.4E-16 | 513 | 717 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Pfam | PF07725 | 9.5E-9 | 576 | 595 | IPR011713 | Leucine-rich repeat 3 |
Gene3D | G3DSA:3.80.10.10 | 9.0E-15 | 718 | 868 | IPR032675 | Leucine-rich repeat domain, L domain-like |
PRINTS | PR00364 | 1.3E-23 | 808 | 824 | No hit | No description |
SuperFamily | SSF46785 | 9.79E-6 | 1087 | 1173 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:2.20.25.80 | 9.5E-26 | 1201 | 1270 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.67E-24 | 1205 | 1270 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-36 | 1207 | 1269 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.085 | 1209 | 1270 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.1E-24 | 1209 | 1268 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0008219 | Biological Process | cell death | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043531 | Molecular Function | ADP binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1391 aa Download sequence Send to blast |
MTNCEKAEEF VCISCVDEVR YSFVSHLSEA LRQKGINNVV IDVDIDSDDL LFKIEKAGVS 60 MMVLPGNCDP SEVWLDKFAK VLECQRNKED QTVVPVLYGD SPLRDEWLSL LDFRGFSPIH 120 QSRKECSDSI LVEEIVRDVY EKLFYKGRIG IYSKLLEIEN MVNKQPIGIR CVGIWGMPGI 180 GKTTLAKAVF DRMSSAFDAS CFIEDYDKSI HEKGLYCLLE EQLFKENPGN DATIMKLSSL 240 RDRLNSKRVL VVLDDVYNAL VVESFLEGFD WLGPESLIII TSRDKQVFRL CGINQIYEVQ 300 GLNEKEALQL FLLCASSKDM REQNLHELSV KVINYANGNP LAISVYGREL KGKKKLSEME 360 TAFLKLKRRP PFKIFDAFKS SYDSLCDNEK NIFLDIACFF QGENVNYVIQ LLEGCGFFPH 420 VEIDVLVEKC LVTISENRIW LHNLTQDVGR EIINGETVQI ERRRRLWEPW SIKYLLEYNE 480 HKANGEPKTT FKRAQGSEKI EGMFLDTSNL RFDVQPSAFK NMLNLRLLKI YCSNPEVHRV 540 INFPKGSLHS LPNELRLLHW ENYPLQSLPQ SFDPRHLVEI NMPYSQLQKL WGGTKNLEML 600 RTIRLCHSQH LVDIDDLLKA QNLEVIDLQG CTRLQNFPAA GQLLRLRVVN LSGCIEIKSV 660 LEMPPNIETL HLQGTGILTF PVSTVKPNHR ELVKFLTEIP GLSEASKLEH LTSLLESSSS 720 CQDLGKLICL ELKDCSCLQS LPNMANLDLL NILDLSGCSR LNSIQGFPRF LKELYLNGTA 780 IREVPQLPQS LELLNARGSC LRSLPNMANL EFLKVLDLSG CSELETIQGF PRNLKELYFA 840 GTTLREVPQL PLSLELLNAH GSDSEKLPMH YNFSNFFDLS PQVVNDFLVK ALTYVKHIPR 900 EYTQELINKA PTFSFSAPSH KNQNATFGLQ PGSSVMTRLN TSWWNTLVGF GMLVEVAFSE 960 DYCDATGLGI SCVCRWSNKD GRSCRIERNF DCWAPAKVVS KVGKDHTFVF CDVNMCPSTG 1020 NDPDIWAGLV VYEFFPINQQ TKCLDDRFTV TRCGVRVINV TTGNTSLENI SLVLSLDPIE 1080 VSGYEAVNEV LRVSYDDLQE MDKVLFLYIA SLFNDEDVDL VAPLVAGIDL DVSSGLKVLA 1140 DVSLISVSSN EEIVMHFLLR QMGKEILHGQ SMLLSDCESS LTEDLSDLPK KKKSKAKKVG 1200 CVQATDVVDL WTWRKYGQKY ILGSNFPRSY YRCTDRFTEG CKATKQVQRS DTDPNMFAIT 1260 YISEHNHPRP TKRKALAGST HSTSSSNYSA ITTFASSRVP QNKDKPNKIH LPSSSPLGSA 1320 AVVFNEKDME ECQENMELDN DVEDTRTLAL FPEFQHQPEE EDPWSTILDG EPMTKFPSHS 1380 SGIYDDLSPP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4c6t_A | 8e-66 | 6 | 150 | 4 | 151 | PROBABLE WRKY TRANSCRIPTION FACTOR 52 |
4c6t_C | 8e-66 | 6 | 150 | 4 | 151 | PROBABLE WRKY TRANSCRIPTION FACTOR 52 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein involved in resistance to fungal and bacterial pathogens, including R.solanacearum, P.syringae pv. tomato and C.higginsianum. In presence of RPS4, elicites an EDS1-dependent hypersensitive response (PubMed:24146667). {ECO:0000250|UniProtKB:Q9FH83, ECO:0000269|PubMed:19519800, ECO:0000269|PubMed:19826224, ECO:0000269|PubMed:24146667, ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.1947s0004.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB470472 | 0.0 | AB470472.1 Arabidopsis thaliana at5g45260 mRNA for putative disease resistance protein, complete cds, ecotype: RLD-0. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020871197.1 | 0.0 | LOW QUALITY PROTEIN: disease resistance protein RRS1 | ||||
Swissprot | C4B7M5 | 0.0 | WR52W_ARATH; Disease resistance protein RRS1 | ||||
TrEMBL | L7Z7P4 | 0.0 | L7Z7P4_ARATH; Resistance to ralstonia solanacearum 1 (Fragment) | ||||
STRING | AT5G45260.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2506 | 8 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45260.1 | 0.0 | Disease resistance protein (TIR-NBS-LRR class) |
Link Out ? help Back to Top | |
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Phytozome | Araha.1947s0004.1.p |
Publications ? help Back to Top | |||
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