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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Araha.19277s0005.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
MIKC_MADS |
Protein Properties |
Length: 171aa MW: 20164.5 Da PI: 10.0116 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Araha.19277s0005.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 90.2 | 1.1e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien + rqvtfskRr g++KKA+ELSvLCda+va i+fs++g+l+eyss
Araha.19277s0005.1.p 9 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIVFSQSGRLHEYSS 59
68***********************************************96 PP
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2 | K-box | 66 | 1.3e-22 | 85 | 170 | 11 | 96 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96
e+ ++l+ e++++ k+i+ L+ +R+llG++L+s+s+ eLq++ +q+eksl +Rs+K el+ +q+++l++ke+el +e k+Lr+
Araha.19277s0005.1.p 85 ERYLQELKMEMNRMVKKIDLLEVHHRKLLGKGLDSCSVAELQEIDTQIEKSLLIVRSRKAELYADQLKKLKEKERELLNERKRLRE 170
667899******************************************************************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009909 | Biological Process | regulation of flower development |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 171 aa
Download sequence Send
to blast |
MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAIVFSQ SGRLHEYSSS 60 EMEKIIERYD KFTNALYVAE RPQVERYLQE LKMEMNRMVK KIDLLEVHHR KLLGKGLDSC 120 SVAELQEIDT QIEKSLLIVR SRKAELYADQ LKKLKEKERE LLNERKRLRE E
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Functional Description ? help
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Source |
Description |
UniProt | MADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY141220 | 0.0 | AY141220.1 Arabidopsis thaliana MADS-box protein AGL71 mRNA, complete cds. |