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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Araha.1920s0001.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
Dof |
Protein Properties |
Length: 248aa MW: 26889.9 Da PI: 9.1502 |
Description |
Dof family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Araha.1920s0001.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-Dof | 120.7 | 5.1e-38 | 36 | 97 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
+e++l+cprCdstntkfCyynnyslsqPryfCk+CrryWtkGG lrn+P+Gg+ rk+k+sss
Araha.1920s0001.1.p 36 PEQSLRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGILRNIPIGGAYRKHKRSSS 97
67899*****************************************************9875 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 248 aa
Download sequence Send
to blast |
MDYSAMHQNV VGVSSCSSQD FQNQKKPSSA TRPAPPEQSL RCPRCDSTNT KFCYYNNYSL 60 SQPRYFCKSC RRYWTKGGIL RNIPIGGAYR KHKRSSSATK SLRTTPEPTA SHDARTFSTA 120 GFGGYNNNIS NEQMELGLAF ALLNKQPLGV SSHLGFGSSQ SPMVMDGVYG TTSQQMENAG 180 YAFGNGGGGL EQMATSDPNK VLWGFPWQMN MGGGSGHSHG HGHVDQIDSG REIWSSTVNY 240 INTGALL*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that negatively affects seed germination and opposes TCP14 function in the regulation of a specific set of abscisic acid-related genes (PubMed:22155632). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:30626969}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By cytokinin in procambium. {ECO:0000269|PubMed:30626969}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AJ243033 | 0.0 | AJ243033.1 Arabidopsis thaliana mRNA for dof zinc finger protein (dof6 gene). |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - de Lucas M, et al.
Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation. Plant Cell, 2016. 28(10): p. 2616-2631 [PMID:27650334] - Ravindran P,Verma V,Stamm P,Kumar PP
A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor. Mol Plant, 2017. 10(10): p. 1307-1320 [PMID:28917589] - Miyashima S, et al.
Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]
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