PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.18373s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 259aa MW: 29138.1 Da PI: 7.697 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.2 | 4.9e-12 | 60 | 83 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C ++++t tCk+Gd+CkF H+ Araha.18373s0001.1.p 60 EKDCTHYMQTRTCKFGDSCKFDHP 83 678********************8 PP | |||||||
2 | zf-CCCH | 35.4 | 1.9e-11 | 109 | 135 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ +t CkyG+rCkF+H++ Araha.18373s0001.1.p 109 PGEPDCPYYIKTQRCKYGSRCKFNHPR 135 5789*********************96 PP | |||||||
3 | zf-CCCH | 38.2 | 2.3e-12 | 154 | 178 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+++tG Ck+G +CkF+H++ Araha.18373s0001.1.p 154 EPMCTFYMKTGKCKFGLTCKFHHPK 178 689********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.432 | 57 | 85 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-6 | 58 | 84 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0041 | 59 | 84 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-9 | 60 | 83 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.3E-5 | 63 | 82 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.3E-5 | 108 | 135 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.018 | 108 | 136 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-8 | 110 | 135 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.05E-6 | 113 | 138 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-6 | 114 | 137 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.3 | 151 | 179 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-4 | 151 | 178 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 154 | 179 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-6 | 156 | 177 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-9 | 157 | 178 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
VEPLPPGVKR TSEALYYPTL LGAHNTIGQT EAWYTTDYFT KRPKLESTSH LPIYPQRAGE 60 KDCTHYMQTR TCKFGDSCKF DHPIWVPEGG IPDWKEAPVV PNEEYPERPG EPDCPYYIKT 120 QRCKYGSRCK FNHPREEAAV SVETQDALPE RPSEPMCTFY MKTGKCKFGL TCKFHHPKDI 180 QVPSSSQDNG SSVGLTSEPD ATNNPHVTFT PALYHNSKGL PVRPVINPSS LCIRLTYYLI 240 GRIGELSTTP SVPIYKMF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.18373s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229145 | 0.0 | AK229145.1 Arabidopsis thaliana mRNA for floral homeotic protein HUA1, partial cds, clone: RAFL16-42-O16. | |||
GenBank | AY024357 | 0.0 | AY024357.1 Arabidopsis thaliana floral homeotic protein HUA1 (HUA1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020886407.1 | 1e-167 | zinc finger CCCH domain-containing protein 37 isoform X1 | ||||
Swissprot | Q941Q3 | 1e-162 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | D7L0J2 | 1e-165 | D7L0J2_ARALL; Enhancer of ag-4 1 | ||||
STRING | fgenesh2_kg.3__1328__AT3G12680.1 | 1e-166 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9761 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-165 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | Araha.18373s0001.1.p |