PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.18004s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HSF | ||||||||
Protein Properties | Length: 138aa MW: 15919.3 Da PI: 10.5926 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 55.3 | 1.8e-17 | 12 | 103 | 2 | 98 |
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT-.-HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhs.nfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 F kly++++d++ + +isws e++nsf++++ ef +++Lpky + nf+ F +L gF++v+ + + +eF h+ F + Araha.18004s0001.1.p 12 FYIKLYQVVDDPSSDAIISWSeESNNSFIIWNVGEFCTTILPKYREFGiNFSRFFSKLRPHGFQRVRGRPGL-------MEFGHEDFVR 93 999******************8788******************9886549******************9987.......********** PP XXXXXXXXXX CS HSF_DNA-bind 89 gkkellekik 98 ++ e l+++ Araha.18004s0001.1.p 94 DSPERLKNMA 103 ******9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.63E-21 | 8 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.1E-25 | 8 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 9.6E-21 | 9 | 100 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.5E-16 | 12 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.5E-6 | 12 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.5E-6 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MGYNFPRGLS SFYIKLYQVV DDPSSDAIIS WSEESNNSFI IWNVGEFCTT ILPKYREFGI 60 NFSRFFSKLR PHGFQRVRGR PGLMEFGHED FVRDSPERLK NMAVESLSAK RRAKRAAKAK 120 AKKARVQVEC LLQHLRI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 123 | KAKAKKA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.18004s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_177880.2 | 7e-44 | Winged helix-turn-helix transcription repressor DNA-binding protein | ||||
TrEMBL | R0GJE4 | 2e-44 | R0GJE4_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.20129s0193.1.p | 4e-57 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3839 | 14 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77570.1 | 2e-45 | Winged helix-turn-helix transcription repressor DNA-binding |
Link Out ? help Back to Top | |
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Phytozome | Araha.18004s0001.1.p |