PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.17470s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 278aa MW: 31746.1 Da PI: 7.4936 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.4 | 1.2e-15 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+ r +t+ kR++ + KKA+E S+LC+++ ++i+++++ Araha.17470s0012.1.p 11 IMNEKTRITTYKKRKACLYKKASEFSTLCGVDTCLIVYGPS 51 88999**********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.404 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.9E-14 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-19 | 2 | 100 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.03E-27 | 2 | 81 | No hit | No description |
PRINTS | PR00404 | 1.4E-6 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-16 | 10 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-6 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-6 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MGRKMVKMVK IMNEKTRITT YKKRKACLYK KASEFSTLCG VDTCLIVYGP SRAGDEMVAE 60 PELWPKDESK VREIITKYRD TVSSNCTKTY TVQECLEKNN TKEEKPKIAM KYPTWDKKLD 120 KCSLNDLYAA FMAVENKIQE ATNRNQTFPD TTCWSNDQLG LCGYNQQCFE QYQLFPLPTM 180 EHNGFSFFPC NNQMTSNTAE VASFSNVTEP MIANGQNLFY GSCSDGSYGP VVQRTAYMEP 240 IQWGLGNTMF NNVKQFQDYP FRFAQGNDLE DSSKLPM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.17470s0012.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB009050 | 0.0 | AB009050.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDF20. | |||
GenBank | AY141214 | 0.0 | AY141214.1 Arabidopsis thaliana MADS-box protein AGL47 mRNA, complete cds. | |||
GenBank | BT026042 | 0.0 | BT026042.1 Arabidopsis thaliana At5g55690 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020879548.1 | 0.0 | agamous-like MADS-box protein AGL82 | ||||
TrEMBL | D7MKK3 | 0.0 | D7MKK3_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_8001596 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5948 | 19 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 0.0 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.17470s0012.1.p |