PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.16804s0010.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 565aa    MW: 62162.6 Da    PI: 7.0623
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.16804s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.31.9e-09413462554
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                           kr +r   NR +A rs +RK  +i eLe kv++L++e ++L  +l  l+ 
  Araha.16804s0010.1.p 413 KRVKRILANRQSAARSKERKMRYIVELEHKVQTLQTEATTLSAQLTLLQR 462
                           899***************************************99988865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.8E-19409473IPR004827Basic-leucine zipper domain
PfamPF077162.9E-8410462IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.473411474IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.81E-11413464No hitNo description
Gene3DG3DSA:1.20.5.1705.0E-11413464No hitNo description
CDDcd147031.65E-23414463No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MGDTEKCSNS DMIQRLHSSF GTSSSSIPKN PISQQLDLNP NFIRSSAPQF FKPFSDSGKR  60
IGVPPSHPNL IPPTSPFSQI PTTRQPGSLN FNPGSASHSR SMSQPNSFFS FDSLPPLSPS  120
PFRDSLSAQP DHDVSMEDRD SGGFNSNHSL PPSPFTRCNS TSSSSLRVGE SLPPRKSHRR  180
SNSDIPSGFN SMIVQNSLPL IPPRPLERSI SGGECADWSK SSPFVKKESS CEREGVGERE  240
SMDDLFSAYM NLENIDVLNS SEADDSKNGN ENRDDMESSR ASGTKTNGSD TEGESSSVNE  300
SANNNNNLNS SGEKRESVKR RAAGGDIAPT TRHYRSVSVD SCFMEKLSFG DESLKPAPSP  360
GTMSRKVSPT NSVDGNSGAA FSIEFKNGEF TAAEMKKIMA NDKLAEMAMS DPKRVKRILA  420
NRQSAARSKE RKMRYIVELE HKVQTLQTEA TTLSAQLTLL QRDMIGFTNQ NNELKFRLQA  480
MEQQARLRDA LNEALNGEVQ RLKLAIGETS QNESERSKMQ SLNAEMFQQL NISQLRQQPQ  540
QMQQQSHQQN HQNGTMATKS ESNE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.16804s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1504350.0AY150435.1 Arabidopsis thaliana unknown protein (At4g38900) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872762.10.0probable transcription factor PosF21
TrEMBLD7MFP70.0D7MFP7_ARALL; Predicted protein
STRINGAl_scaffold_0007_760.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42242757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.30.0bZIP family protein