PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.16550s0003.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Nin-like

Protein Properties

Length: 750aa MW: 83914.7 Da PI: 7.3005

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.16550s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.5	3e-29	462	512	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Araha.16550s0003.1.p 462 EKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 512 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.461	447	532	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-26	464	512	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.88E-20	641	731	No hit	No description
PROSITE profile	PS51745	18.616	649	731	IPR000270	PB1 domain
SMART	SM00666	3.0E-22	649	731	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.1E-26	650	731	No hit	No description
Pfam	PF00564	9.2E-17	650	730	IPR000270	PB1 domain
CDD	cd06407	1.22E-32	650	730	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence Send to blast
MPLENPDSYC AIKAKMTQAL RYFKESTGQQ HVLAQVWAPV KNRGRYVLTT SGQPFVLGPN 60 SNGLNQYRMV SLTYMFALDG ERDGELGLPG RVFRKKLPEW TPNVQYYSSK EFSRLGHALH 120 YNVQGTLALP VFEPSRQLCV GVVELIMTSP KINYAPEVEK VCKALEAVNL KTSEILNHET 180 TQICNEGRQN ALAEILEILT VVCETYKLPL AQTWVPCRHR SVLAFGGGFK KSCSSFDGSC 240 MGKVCMSTSD LAVYVVDAHV WGFRDACAEH HLQKGQGVAG RAFLSGNLCF CRDVTRFCKT 300 DYPLVHYARM FKLTSCFAVC LKSTYTGDDE YVLEFFLPPA ITDKSEQDFL LGSLLQTMKQ 360 HYSSLKVVSE TELCENNMSL EVVEASEDGM VYSNLEPIRT HYPAPMSKDY LELKAPEQKL 420 SLNSDLMENI EVDDGFERFQ TLDPIPEAKT VKKSERKRGK TEKTISLEVL QQYFAGSLKD 480 AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLTRLK HVIDSVQGAD GSLNLTSLSP 540 HPWPHQIPPI ENQLPKKCPP TSTSPLSNLQ DVKIENRDAE DSAGSSTSRA SCKVSPICET 600 RFRLPTHNQE PLRQTGLDDS DSSSKNITNF WTHLSCQDTA SPTTLHNKLV SIKATYREDI 660 IRFKISPESV SITELKQQVA KRLKLETAAF ELKYLDDDRE WVSVSCVADL SECLDTSAAK 720 ANTLRLSVHD VTFNFGSSCE SSEETMMCL*

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence Send to blast

MPLENPDSYC AIKAKMTQAL RYFKESTGQQ HVLAQVWAPV KNRGRYVLTT SGQPFVLGPN  60
SNGLNQYRMV SLTYMFALDG ERDGELGLPG RVFRKKLPEW TPNVQYYSSK EFSRLGHALH  120
YNVQGTLALP VFEPSRQLCV GVVELIMTSP KINYAPEVEK VCKALEAVNL KTSEILNHET  180
TQICNEGRQN ALAEILEILT VVCETYKLPL AQTWVPCRHR SVLAFGGGFK KSCSSFDGSC  240
MGKVCMSTSD LAVYVVDAHV WGFRDACAEH HLQKGQGVAG RAFLSGNLCF CRDVTRFCKT  300
DYPLVHYARM FKLTSCFAVC LKSTYTGDDE YVLEFFLPPA ITDKSEQDFL LGSLLQTMKQ  360
HYSSLKVVSE TELCENNMSL EVVEASEDGM VYSNLEPIRT HYPAPMSKDY LELKAPEQKL  420
SLNSDLMENI EVDDGFERFQ TLDPIPEAKT VKKSERKRGK TEKTISLEVL QQYFAGSLKD  480
AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLTRLK HVIDSVQGAD GSLNLTSLSP  540
HPWPHQIPPI ENQLPKKCPP TSTSPLSNLQ DVKIENRDAE DSAGSSTSRA SCKVSPICET  600
RFRLPTHNQE PLRQTGLDDS DSSSKNITNF WTHLSCQDTA SPTTLHNKLV SIKATYREDI  660
IRFKISPESV SITELKQQVA KRLKLETAAF ELKYLDDDRE WVSVSCVADL SECLDTSAAK  720
ANTLRLSVHD VTFNFGSSCE SSEETMMCL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.16550s0003.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT000933	0.0	BT000933.1 Arabidopsis thaliana clone C104874 unknown protein (At1g64530) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020891098.1	0.0	protein NLP6 isoform X2
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	D7KS88	0.0	D7KS88_ARALL; RWP-RK domain-containing protein
STRING	fgenesh2_kg.2__24__AT1G64530.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Araha.16550s0003.1.p

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]