PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.1635s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 408aa MW: 44620.5 Da PI: 6.7931

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.1635s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.5	0.00054	267	302	15	55
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +++ L +l+ + +K + a++L +A+ YI+ Lq Araha.1635s0001.1.p 267 KLGGRIAALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 302 5556788888888887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.299	252	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.43E-5	262	306	No hit	No description
SuperFamily	SSF47459	6.41E-10	262	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-7	267	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MNRGVLESSP VQQLMAAGNP NWWNVSGGMR PPPPLMGHQQ APLPPHMTPN NNYLRPRMMP 60 TPLPHFLPSP ATSSSSSSSP SLPNNPNLSS WLESNDLPPE SWSLSQLLLG GLMMGEEERL 120 EMMNHHNHHD EQQHHSFQGK MRLENWEEQV LSHQQASMVA VDIKQESNIN NNNGYVISSP 180 NSPPNKSCVT TTTTTSLNSN DDNINNNNNM LDFSSNHNGL HLSEGRHTPP DRSSECNSLE 240 IGGSTNKKPR LQPSPSSQST LKVRKEKLGG RIAALHQLVS PFGKTDTASV LSEAIGYIRF 300 LQSQIEALSH PYFGTTASGN LRHQQHLQGD RSCIFPEDPG QLVNDQCMKR RGASSSSPTD 360 NQNASEEPKK DLRSRGLCLV PISCTLQVGS DNGADYWAPA LGSAGFH*

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MNRGVLESSP VQQLMAAGNP NWWNVSGGMR PPPPLMGHQQ APLPPHMTPN NNYLRPRMMP  60
TPLPHFLPSP ATSSSSSSSP SLPNNPNLSS WLESNDLPPE SWSLSQLLLG GLMMGEEERL  120
EMMNHHNHHD EQQHHSFQGK MRLENWEEQV LSHQQASMVA VDIKQESNIN NNNGYVISSP  180
NSPPNKSCVT TTTTTSLNSN DDNINNNNNM LDFSSNHNGL HLSEGRHTPP DRSSECNSLE  240
IGGSTNKKPR LQPSPSSQST LKVRKEKLGG RIAALHQLVS PFGKTDTASV LSEAIGYIRF  300
LQSQIEALSH PYFGTTASGN LRHQQHLQGD RSCIFPEDPG QLVNDQCMKR RGASSSSPTD  360
NQNASEEPKK DLRSRGLCLV PISCTLQVGS DNGADYWAPA LGSAGFH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.1635s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488634	0.0	AF488634.2 Arabidopsis thaliana clone bHLH068 putative bHLH transcription factor mRNA, complete cds.
GenBank	AY081316	0.0	AY081316.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.
GenBank	BT000121	0.0	BT000121.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010438345.1	0.0	PREDICTED: transcription factor bHLH68-like
Swissprot	Q8S3D1	0.0	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A178V0M1	0.0	A0A178V0M1_ARATH; Uncharacterized protein
STRING	XP_010438345.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1872	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	Araha.1635s0001.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]