 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Araha.15805s0005.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
Family |
M-type_MADS |
Protein Properties |
Length: 382aa MW: 42936 Da PI: 9.7162 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Araha.15805s0005.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 69 | 4.4e-22 | 26 | 73 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
+ ++s r ++++kR+++++KKAeELS+LC+++v+vi + s+gkl++++
Araha.15805s0005.1.p 26 SASSSSRATSLIKRQATVFKKAEELSILCGIDVCVICYMSDGKLKTWP 73
568999*****************************************8 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 382 aa
Download sequence Send
to blast |
MASSSSSSLS SSSSKKNKTL FKKPNSASSS SRATSLIKRQ ATVFKKAEEL SILCGIDVCV 60 ICYMSDGKLK TWPEDREKVK AIARRYGELS ETKRRKGSVD LHEFLERINK DDSKQEEKKK 120 KIKVRRVSRV KYPVWDPRFD NYSVEQLTGL VQSLERNLTR IQYRTHAVVE AQGQRRMQYT 180 NMANQELMMA HTMNQLQQHS NQVSMYLWNH DNGSFSQIPV SALASNQAQS LAPIPSELMI 240 YPNSDVGNYS GSLGVQGTGI NGLQNMNMLT YNNINSVNDF AKQIDQNSRV QSYSSLLGVH 300 EYGNNEFENT NMSSRNNFNV QDYAGLLGVE GTGTNGLQSM NMHDYNNNNN NSINANGLSH 360 QLVQFPTATP DFQFGSIRKQ Y*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AB026654 | 0.0 | AB026654.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MVE11. |
GenBank | BT029549 | 0.0 | BT029549.1 Arabidopsis thaliana At3g18650 mRNA, complete cds. |
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |