PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 382aa MW: 42936 Da PI: 9.7162

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.15805s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	69	4.4e-22	26	73	3	50
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 + ++s r ++++kR+++++KKAeELS+LC+++v+vi + s+gkl++++ Araha.15805s0005.1.p 26 SASSSSRATSLIKRQATVFKKAEELSILCGIDVCVICYMSDGKLKTWP 73 568999*****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.5E-7	14	75	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	12.18	28	76	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-15	28	72	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.49E-17	28	107	IPR002100	Transcription factor, MADS-box
CDD	cd00266	4.59E-17	36	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MASSSSSSLS SSSSKKNKTL FKKPNSASSS SRATSLIKRQ ATVFKKAEEL SILCGIDVCV 60 ICYMSDGKLK TWPEDREKVK AIARRYGELS ETKRRKGSVD LHEFLERINK DDSKQEEKKK 120 KIKVRRVSRV KYPVWDPRFD NYSVEQLTGL VQSLERNLTR IQYRTHAVVE AQGQRRMQYT 180 NMANQELMMA HTMNQLQQHS NQVSMYLWNH DNGSFSQIPV SALASNQAQS LAPIPSELMI 240 YPNSDVGNYS GSLGVQGTGI NGLQNMNMLT YNNINSVNDF AKQIDQNSRV QSYSSLLGVH 300 EYGNNEFENT NMSSRNNFNV QDYAGLLGVE GTGTNGLQSM NMHDYNNNNN NSINANGLSH 360 QLVQFPTATP DFQFGSIRKQ Y*

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MASSSSSSLS SSSSKKNKTL FKKPNSASSS SRATSLIKRQ ATVFKKAEEL SILCGIDVCV  60
ICYMSDGKLK TWPEDREKVK AIARRYGELS ETKRRKGSVD LHEFLERINK DDSKQEEKKK  120
KIKVRRVSRV KYPVWDPRFD NYSVEQLTGL VQSLERNLTR IQYRTHAVVE AQGQRRMQYT  180
NMANQELMMA HTMNQLQQHS NQVSMYLWNH DNGSFSQIPV SALASNQAQS LAPIPSELMI  240
YPNSDVGNYS GSLGVQGTGI NGLQNMNMLT YNNINSVNDF AKQIDQNSRV QSYSSLLGVH  300
EYGNNEFENT NMSSRNNFNV QDYAGLLGVE GTGTNGLQSM NMHDYNNNNN NSINANGLSH  360
QLVQFPTATP DFQFGSIRKQ Y*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.15805s0005.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026654	0.0	AB026654.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MVE11.
GenBank	BT029549	0.0	BT029549.1 Arabidopsis thaliana At3g18650 mRNA, complete cds.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002885269.2	0.0	LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL103
Swissprot	Q9LSB2	0.0	AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBL	A0A178V6E8	0.0	A0A178V6E8_ARATH; AGL103
STRING	fgenesh2_kg.3__2072__AT3G18650.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	0.0	AGAMOUS-like 103

Link Out ? help Back to Top
Phytozome	Araha.15805s0005.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]