PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.15335s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 176aa    MW: 20045.2 Da    PI: 9.933
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.15335s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.93.9e-111664149
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          k++e +  r vtfs+R++ i    +ELS LC+a+   +++sstgk y++
  Araha.15335s0003.1.p 16 KKVEKYKERMVTFSRRQKDIYTNLSELSLLCGADFGFLVISSTGKPYTF 64
                          5689999*****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.4768IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-10767IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-16885IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-71030IPR002100Transcription factor, MADS-box
PfamPF003191.9E-141764IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-73045IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-74566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MSSKKNKGRK KINLKKKVEK YKERMVTFSR RQKDIYTNLS ELSLLCGADF GFLVISSTGK  60
PYTFGNPSFE AVAKRFLNGE GSSLLQQDAQ HKMKMEELYK VYNSLVEKIA AEEKKLMMAK  120
AEAEALPFES NAWWKIDPAE VKEEKVAKQL LEKYEELYEK LQKEIAARNH GGGVP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1832RKKINLKKKVEKYKERMVTFSRRQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.15335s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875741.11e-111agamous-like MADS-box protein AGL61
TrEMBLD7LMQ21e-110D7LMQ2_ARALL; Uncharacterized protein
STRINGscaffold_501435.11e-110(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.11e-37AGAMOUS-like 64