PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.15034s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 354aa    MW: 39852.9 Da    PI: 6.093
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.15034s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.7e-30167224260
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                           +Dgy WrKYGqK+vk+se+prsY++Ct+++C +kk ve+++ d++++ei+Y+g Hnh+k
  Araha.15034s0001.1.p 167 NDGYGWRKYGQKQVKKSENPRSYFKCTYPDCVSKKIVETAS-DGQITEIIYKGGHNHPK 224
                           8***************************************9.***************85 PP
2WRKY48.91.3e-15330354327
                           -SS-EEEEEEE--TT-SS-EEEEEE CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrC 27 
                           Dg++WrKYGqK+vkg+++prsYY+C
  Araha.15034s0001.1.p 330 DGFRWRKYGQKVVKGNTNPRSYYKC 354
                           9************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-24161225IPR003657WRKY domain
SuperFamilySSF1182906.28E-23164225IPR003657WRKY domain
SMARTSM007744.9E-30166224IPR003657WRKY domain
PROSITE profilePS5081120.346167225IPR003657WRKY domain
PfamPF031062.7E-22167223IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-16313354IPR003657WRKY domain
SuperFamilySSF1182906.28E-13320354IPR003657WRKY domain
PROSITE profilePS5081117.775323354IPR003657WRKY domain
SMARTSM007742.8E-4328354IPR003657WRKY domain
PfamPF031069.6E-11330354IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSSTSFTDLL ESSGVDCYED DEDLIVSGSI FGGYYQERTG SGLPKFKTAQ PHPIPISPSS  60
HNFTFSDFLD SPLLLSSSHS LISPTTGTFP LQGFNGTTNN HSDHFPWQLQ SQPSNASSAL  120
QETYGVQDHH KKQEMIPHEI ATQNNNQSFG SDHQIKIPAY MVSRNSNDGY GWRKYGQKQV  180
KKSENPRSYF KCTYPDCVSK KIVETASDGQ ITEIIYKGGH NHPKPEFSKR PSQSSLPSSV  240
NGRRLFNPAS VVSEPHDQSE NSSISFDYSD LEQKSFKSEY GEVDEEEEQP EMKRMKREGE  300
DEGMSIEVSR GVKEPRVVVQ TISDIDVLID GFRWRKYGQK VVKGNTNPRS YYKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-121672251574WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY33 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Plays a partial role in heat stress tolerance (PubMed:19125253). Functions with WRKY26 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253, ECO:0000269|PubMed:21336597}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00282DAPTransfer from AT2G30250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.15034s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress (PubMed:18839316). Induced by heat stress (PubMed:19125253). {ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4183090.0AF418309.1 Arabidopsis thaliana WRKY transcription factor 25 (WRKY25) mRNA, complete cds.
GenBankAY0627200.0AY062720.1 Arabidopsis thaliana putative WRKY-type DNA binding protein (At2g30250; T9D9.6) mRNA, complete cds.
GenBankAY1146500.0AY114650.1 Arabidopsis thaliana putative WRKY-type DNA binding protein (At2g30250) mRNA, complete cds.
GenBankAY1363180.0AY136318.1 Arabidopsis thaliana putative WRKY-type DNA binding protein (At2g30250) mRNA, complete cds.
GenBankBT0084820.0BT008482.1 Arabidopsis thaliana At2g30250 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881094.10.0probable WRKY transcription factor 25
SwissprotO229210.0WRK25_ARATH; Probable WRKY transcription factor 25
TrEMBLD7LBL70.0D7LBL7_ARALL; WRKY DNA-binding protein 25
STRINGBostr.24513s0217.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116031733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30250.10.0WRKY DNA-binding protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]