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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.1486s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | BES1 | ||||||||
Protein Properties | Length: 248aa MW: 26783.8 Da PI: 9.9053 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 208.6 | 1.7e-64 | 17 | 156 | 2 | 144 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 +++rkp+w+ErEnn+rRERrRRa+aakiy+GLRaqGny+lpk++DnneVlkALc eAGwvve+DGttyrkg kpl ++agss++a+p Araha.1486s0003.1.p 17 ATRRKPSWRERENNRRRERRRRAVAAKIYTGLRAQGNYNLPKHCDNNEVLKALCSEAGWVVEEDGTTYRKGHKPL-PGDMAGSSSRATPY 105 689************************************************************************.************** PP DUF822 92 sslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvls 144 ss ++s+ ss++ sp+ sy+ sp+sssfpsps++ ++ ++++p+l++ + Araha.1486s0003.1.p 106 SSHNQSPLSSTFDSPILSYQVSPSSSSFPSPSRVGDPHNI--STIFPFLRNGG 156 *********************************8776655..67888888775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 2.7E-61 | 18 | 139 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MTSDGATSTS AAAAAMATRR KPSWRERENN RRRERRRRAV AAKIYTGLRA QGNYNLPKHC 60 DNNEVLKALC SEAGWVVEED GTTYRKGHKP LPGDMAGSSS RATPYSSHNQ SPLSSTFDSP 120 ILSYQVSPSS SSFPSPSRVG DPHNISTIFP FLRNGGIPSS LPPLRISNSA PVTPPPFSAS 180 MVPTSPTFNL VKPAPQQLSP NTAATQEIGQ SSEFKFENSQ VKPWEGERIH DVAMEDLELT 240 LGNGKSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 4e-37 | 19 | 101 | 371 | 453 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 4e-37 | 19 | 101 | 371 | 453 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 4e-37 | 19 | 101 | 371 | 453 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 4e-37 | 19 | 101 | 371 | 453 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 18 | 37 | RRKPSWRERENNRRRERRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of brassinosteroid (BR) signaling. Transcription factor that activates target gene expression by binding specifically to the DNA sequence 5'-CANNTG-3'(E box) through its N-terminal domain. Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BIM1, BIM2 or BIM3. The C-terminal domain is probably involved in transcriptional activation (PubMed:12007405, PubMed:15680330, PubMed:18467490, PubMed:19170933). Recruits the transcription elongation factor IWS1 to control BR-regulated gene expression (PubMed:20139304). Forms a trimeric complex with IWS1 and ASHH2/SDG8 to regulate BR-regulated gene expression (PubMed:24838002). Promotes quiescent center (QC) self-renewal by cell divisions in the primary root. Binds to the E-boxes of the BRAVO promoter to repress its expression (PubMed:24981610). {ECO:0000269|PubMed:12007405, ECO:0000269|PubMed:15680330, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19170933, ECO:0000269|PubMed:20139304, ECO:0000269|PubMed:24838002, ECO:0000269|PubMed:24981610}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.1486s0003.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF134217 | 0.0 | AF134217.1 Arabidopsis thaliana 107 protein (107) mRNA, complete cds. | |||
GenBank | AY065041 | 0.0 | AY065041.1 Arabidopsis thaliana At1g19350/F18O14_4 mRNA, complete cds. | |||
GenBank | AY086340 | 0.0 | AY086340.1 Arabidopsis thaliana clone 24157 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_973863.1 | 2e-90 | Brassinosteroid signaling positive regulator (BZR1) family protein | ||||
Refseq | XP_009117543.1 | 1e-90 | PREDICTED: protein BRASSINAZOLE-RESISTANT 2-like | ||||
Refseq | XP_009117544.1 | 1e-90 | PREDICTED: protein BRASSINAZOLE-RESISTANT 2-like | ||||
Refseq | XP_009117545.1 | 1e-90 | PREDICTED: protein BRASSINAZOLE-RESISTANT 2-like | ||||
Refseq | XP_013664647.1 | 1e-90 | protein BRASSINAZOLE-RESISTANT 2-like | ||||
Refseq | XP_020870402.1 | 2e-90 | protein BRASSINAZOLE-RESISTANT 2 | ||||
Refseq | XP_020870404.1 | 2e-90 | protein BRASSINAZOLE-RESISTANT 2 | ||||
Swissprot | Q9LN63 | 2e-91 | BZR2_ARATH; Protein BRASSINAZOLE-RESISTANT 2 | ||||
TrEMBL | A0A078G5C8 | 9e-89 | A0A078G5C8_BRANA; BnaA09g44210D protein | ||||
TrEMBL | A0A178W3G4 | 4e-89 | A0A178W3G4_ARATH; BZR2 | ||||
TrEMBL | A0A397YB44 | 2e-89 | A0A397YB44_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P5Y899 | 9e-89 | A0A3P5Y899_BRACM; Uncharacterized protein | ||||
TrEMBL | D7KHC7 | 4e-89 | D7KHC7_ARALL; Bri1-ems-suppressor 1 | ||||
TrEMBL | F4HP45 | 5e-89 | F4HP45_ARATH; Brassinosteroid signaling positive regulator (BZR1) family protein | ||||
TrEMBL | M4EQK6 | 9e-89 | M4EQK6_BRARP; Uncharacterized protein | ||||
STRING | AT1G19350.3 | 9e-90 | (Arabidopsis thaliana) | ||||
STRING | Bra031077.1-P | 1e-89 | (Brassica rapa) | ||||
STRING | fgenesh2_kg.1__2112__AT1G19350.4 | 6e-90 | (Arabidopsis lyrata) | ||||
STRING | Bostr.7128s0539.1.p | 6e-90 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15511 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19350.3 | 3e-84 | BES1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.1486s0003.1.p |