PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.14782s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 384aa    MW: 42938.2 Da    PI: 8.794
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.14782s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.94.8e-34120176259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           dDgynWrKYGqK+vkgs+fprsYY+Ct++ Cpvkkkvers  d++v+ei+Y+g+Hnhe
  Araha.14782s0006.1.p 120 DDGYNWRKYGQKQVKGSDFPRSYYKCTHPVCPVKKKVERSL-DGQVTEIIYKGQHNHE 176
                           8****************************************.***************7 PP
2WRKY106.11.8e-33284342159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vkg+++prsYY+Ct+++C v+k+ver+a+dpk+v++tYeg+Hnh+
  Araha.14782s0006.1.p 284 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPDCGVRKHVERAANDPKAVVTTYEGKHNHD 342
                           59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-29111178IPR003657WRKY domain
PROSITE profilePS5081123.858114178IPR003657WRKY domain
SuperFamilySSF1182907.98E-26117178IPR003657WRKY domain
SMARTSM007741.3E-36119177IPR003657WRKY domain
PfamPF031068.7E-26120176IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-36269344IPR003657WRKY domain
SuperFamilySSF1182901.31E-29276344IPR003657WRKY domain
PROSITE profilePS5081137.275279344IPR003657WRKY domain
SMARTSM007744.8E-38284343IPR003657WRKY domain
PfamPF031068.2E-26285342IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MFTVPPGLSP ATLLDSPSFF GLFSPLQGAF GMTHQQALAQ VTAQAVQGNN VHMQQSQSEY  60
PSSTQQQQQT SLTEVPSFSS GPRSQIRASV QETSQGQRDT SEISVFEHRS QPQNADKPAD  120
DGYNWRKYGQ KQVKGSDFPR SYYKCTHPVC PVKKKVERSL DGQVTEIIYK GQHNHELPQK  180
RGNNNGNSKS SDIATQFQTS NSSLNKSKRD QERSQVTTTE QMSEASDSEE VGNAETTVGE  240
KHEDEPDPKR RNTEVRVSEP VASSHRTVTE PRIIVQTKSE VDLLDDGYRW RKYGQKVVKG  300
NPYPRSYYKC TTPDCGVRKH VERAANDPKA VVTTYEGKHN HDVPAGRTSS HQLRPNNQPN  360
TSTVNFNQQQ PVAHLRLKEE QII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-4494345578Probable WRKY transcription factor 4
2lex_A6e-4494345578Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.14782s0006.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2247010.0AF224701.1 Arabidopsis thaliana WRKY DNA-binding protein 3 (WRKY3) mRNA, complete cds.
GenBankAK2290360.0AK229036.1 Arabidopsis thaliana mRNA for putative WRKY DNA-binding protein, complete cds, clone: RAFL16-33-J05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880320.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ700.0WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLD7LQG60.0D7LQG6_ARALL; WRKY DNA-binding protein 3
STRINGfgenesh2_kg.5__234__AT2G03340.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.10.0WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]