PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.14524s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | FAR1 | ||||||||
Protein Properties | Length: 733aa MW: 85039.4 Da PI: 7.1049 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84 | 2.4e-26 | 12 | 97 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++ra+ ++gCka+++vk++ dgkw+v+++++eHnH+l p Araha.14524s0002.1.p 12 FYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDA----INPRASPKIGCKASMHVKRRPDGKWYVYSFVKEHNHDLLP 97 9****************************************99887....9************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.6E-24 | 12 | 97 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.2E-26 | 212 | 304 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.546 | 490 | 526 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.6E-9 | 490 | 524 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.4E-8 | 501 | 528 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 733 aa Download sequence Send to blast |
MEFETHEDAY LFYKDYAKSV GFGTAKLSSR RSRASKEFID AKFSCIRYGS KQQSDDAINP 60 RASPKIGCKA SMHVKRRPDG KWYVYSFVKE HNHDLLPEQA HYFRSHRNTE LVKSTDTRLR 120 RKKNSPLTDC KHLSAYNDLD FIDGYMRNQH DKGRRLVLDT GDAEILLEFL MRMQEENPKF 180 FFAVDFSEDH LLRNVFWVDA KGIEDYKSFS DVVSFETTYF VSKYKVPIVL FVGVNHHVQP 240 VLLGCGLLAD DTVYTYVWLM QSWLVAMGGQ KPKVMLTDQN NAIKAAIAAV LPETRHCYCL 300 WHVLDRLPRN LDYWSMWQDT FMKKLFKCIY RSWSEEEFDR RWLKLIDKFH LRDVQWMRSL 360 YEERMFWAPT FMRGITFAGL STRCRSESVN SLFDRYVHAE TSLKEFLEGY GLMLEDRYEE 420 EAKADFDAWH EAPELKSPSP FEKQMLLVYS HEIFRKFQLE VLGAAACHLT KESEEGTTYS 480 VKDFDDDQKY LVDWDEFKSD IYCSCRSFEY KGYLCRHAIV VLQMSGVFII PINYVLQRWT 540 NAARNRHQIS GNLELVQSNI RRFNDLCRRA IILGEEGSLS QESYDIAMFA MKEAFKQCAV 600 KITTIEHPAR CEEAAIQAGH PVQEENQYGS TSNQIGPEPN IHAGNVPWQG ETRREKRSSL 660 SNTSKKAKHV AQSETVGEGS QEGFQHVAAP RQSQAVLAGQ FHNTMPGVFQ NLIHTEFQNI 720 PTTNMHQNNP PG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.14524s0002.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK221406 | 0.0 | AK221406.1 Arabidopsis thaliana mRNA for putative phytochrome A signaling protein, complete cds, clone: RAFL25-49-E06. | |||
GenBank | BT010456 | 0.0 | BT010456.1 Arabidopsis thaliana far-red impaired response protein -related (At1g76320) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020890971.1 | 0.0 | protein FAR1-RELATED SEQUENCE 4 isoform X1 | ||||
Refseq | XP_020890972.1 | 0.0 | protein FAR1-RELATED SEQUENCE 4 isoform X1 | ||||
Swissprot | Q6NQJ7 | 0.0 | FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4 | ||||
TrEMBL | A0A178WNR6 | 0.0 | A0A178WNR6_ARATH; FRS4 | ||||
STRING | AT1G76320.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.1 | 0.0 | FAR1-related sequence 4 |
Link Out ? help Back to Top | |
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Phytozome | Araha.14524s0002.1.p |
Publications ? help Back to Top | |||
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