PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.14317s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 307aa    MW: 35175.9 Da    PI: 9.7045
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.14317s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.3e-14127177154
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           +r +h ++Er+RR+++N+ ++ Lr llP++   + ++ + a+i+  A++Y+k L
  Araha.14317s0003.1.p 127 QRINHIAVERNRRRQMNEHINSLRALLPPS---YIQRGDQASIVGGAINYVKVL 177
                           699***************************...9*****************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.77E-18125207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.53E-11125182No hitNo description
PROSITE profilePS5088815.51126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-11127177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-13128192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-10132183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MERFQGHINP CFFDRKPDVR SLEVQGFAEA QSFAFKEEEE ESLQDTVPFL QMLQTSSMEG  60
ANQALSNQEL FLRQANMTLP SSTSSPLTTN SRRKRKINHL LPQEMTREKR KRRKTKPSKN  120
IEEIENQRIN HIAVERNRRR QMNEHINSLR ALLPPSYIQR GDQASIVGGA INYVKVLEQI  180
IQSLESQKRT QQESSEVVEN AINHLSGISS NDLWTTQEDQ TCIPKIDATV IQNHVSLKVQ  240
CQKKQGQLLK GIISLEKLKL TVLHLNITTS SHSSVSYSFN LKKSNHCFSL PYSLMSFDYY  300
TDRPTK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193113KRKINHLLPQEMTREKRKRRK
2108113KRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.14317s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304810.0AJ630481.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g61950.
GenBankAK1185270.0AK118527.1 Arabidopsis thaliana At3g61950 mRNA for putative bHLH transcription factor (bHLH067), complete cds, clone: RAFL19-75-M14.
GenBankBT0052980.0BT005298.1 Arabidopsis thaliana At3g61950 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880824.11e-171transcription factor bHLH67
SwissprotQ700E41e-157BH067_ARATH; Transcription factor bHLH67
TrEMBLD7LSR11e-169D7LSR1_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.5__2692__AT3G61950.11e-170(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.11e-145bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA
    Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
    J. Exp. Bot., 2015. 66(5): p. 1543-52
    [PMID:25582452]