PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.13695s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 569aa MW: 63500.4 Da PI: 4.291 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.6 | 2.4e-53 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 l+pGfrFhPtdeelv +yLk+kv +k++++ ++i+ +diyk+ePwdLp k k+k+++ ewyfFs dkky++g+++nrat++gyWk+tg Araha.13695s0002.1.p 9 LAPGFRFHPTDEELVRYYLKRKVCNKPFKF-DAISVTDIYKSEPWDLPdKsKLKSRDLEWYFFSMLDKKYSNGSKTNRATEKGYWKTTG 96 579**************************9.99**************95347777888******************************* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 kd+e+ + ++++vg+kktLv++kgrap+ge+t+Wvmheyrl Araha.13695s0002.1.p 97 KDREIRN-GSRVVGMKKTLVYHKGRAPRGERTNWVMHEYRL 136 ******9.9******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.22E-61 | 7 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.576 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.5E-28 | 11 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 569 aa Download sequence Send to blast |
MGRGSVTSLA PGFRFHPTDE ELVRYYLKRK VCNKPFKFDA ISVTDIYKSE PWDLPDKSKL 60 KSRDLEWYFF SMLDKKYSNG SKTNRATEKG YWKTTGKDRE IRNGSRVVGM KKTLVYHKGR 120 APRGERTNWV MHEYRLSDED LKKAGVPQEA YVLCRIFQKS GTGPKNGEQY GAPFLEEEWE 180 EDGMTYVPDQ DSFSEGLAVD DDVYVDIDDI DEKPENLVVY DAVPILPNYC HGESSNNVES 240 GNYSDSGNYL QPGNYVVDSG GYFEQPIETF EDDQKPIIRD GSIQPCSLFP EEQIGCGVQD 300 ENAVNLESSN NNVFVADTCY SDIPIDTNYL PDDPFMDPNN NLPLNDGLYL ETNDLSCAQQ 360 DDFNFEDYLN FFDDESFTLD DSQLMGPEDA LPNLEGLNQK PTPEELEKEV AGGKEAVEEK 420 ESGEGSSSKQ DADVKDFDSA SKYPFLKKTS HMLGAIPTPS SFASQFQTKD AAMRLHAAQS 480 SGSVHVTAGM IRISNMTLAA DSGMGWSYDK NGNLNVVLSF GVVQRDDALS ALGSKTETTA 540 TRAMLVFMCL WVLLLSVSFK IVTMVSAR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-44 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-44 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-44 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-44 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-44 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-44 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-44 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-44 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-44 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-44 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-44 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-44 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-44 | 8 | 165 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-44 | 8 | 165 | 16 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00059 | PBM | Transfer from AT5G04410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.13695s0002.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY099609 | 0.0 | AY099609.1 Arabidopsis thaliana putative protein (At5g04410) mRNA, complete cds. | |||
GenBank | AY128859 | 0.0 | AY128859.1 Arabidopsis thaliana putative protein (At5g04410) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002871092.1 | 0.0 | NAC domain-containing protein 78 isoform X2 | ||||
Swissprot | Q84K00 | 0.0 | NAC78_ARATH; NAC domain-containing protein 78 | ||||
TrEMBL | D7LXI4 | 0.0 | D7LXI4_ARALL; Uncharacterized protein | ||||
STRING | scaffold_600382.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3192 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 0.0 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Araha.13695s0002.1.p |