PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.13660s0008.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 456aa    MW: 50876.1 Da    PI: 9.2178
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.13660s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000691111323
                           ETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                           C  Cgk F ++  L  H+ +H
  Araha.13660s0008.1.p  91 CRECGKGFVSSKALCGHMASH 111
                           99*****************99 PP
2zf-C2H211.80.00075399421123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++Cp+C ++F++   L  H r+H
  Araha.13660s0008.1.p 399 HECPICFRVFKSGQALGGHKRSH 421
                           79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.21E-6535No hitNo description
Gene3DG3DSA:3.30.160.604.5E-5634IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.094936IPR007087Zinc finger, C2H2
SMARTSM003550.17931IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-5932IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.55489116IPR007087Zinc finger, C2H2
SMARTSM003550.06889111IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090111IPR007087Zinc finger, C2H2
SuperFamilySSF576675.26E-790111No hitNo description
PfamPF139128.6E-490113IPR007087Zinc finger, C2H2
SuperFamilySSF576675.26E-7394421No hitNo description
SMARTSM003550.14399421IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974399421IPR007087Zinc finger, C2H2
PfamPF139123.9E-10399421IPR007087Zinc finger, C2H2
PROSITE patternPS000280401421IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MEQFKERKFV CKFCSKRFPC GKSLGGHIRT HMNENSADSD EDESNKLKMI DENGGQSSYG  60
LRENPKKNKR FVDHRQMMAL KQQQLQQLLC CRECGKGFVS SKALCGHMAS HSEREKIVMD  120
SQSDTEASSS PIRRRSKRVV VKHHHKAAFV VGGNGIMNQS ISASSDASEI EPEQEEMARS  180
LMMLSRDSSF KKGHNLVVNS LAESSDNNSV ILETKSSSGE HLKMFNVKNV EEFCEKNKLV  240
LDNQMRAGED NGDVLYDSDN SDSGYFRNGP KKLDSDVSVD GFFRNKAVMG SGSGFNSSPT  300
KQDMEMNRFK KEWYKEGGSG SGSGSGRSST KYDLRKSKRG FPSNGRKKIK YEFTESVYDS  360
GEHSLETDSC ADTNRTIKIH SKSAMVNKAS GAKKKNKGHE CPICFRVFKS GQALGGHKRS  420
HFIGNQEHRT LVIQHQVAHE MHTLIDLNLP APIDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.13660s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT1K70.0AC013427.3 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867941.10.0uncharacterized protein LOC9326714
TrEMBLD7KQN70.0D7KQN7_ARALL; Zinc finger family protein (Fragment)
STRINGfgenesh2_kg.1__2702__AT1G26610.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.10.0C2H2-like zinc finger protein