PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.13525s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 290aa    MW: 32103.6 Da    PI: 8.2269
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.13525s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.11.1e-253786959
                          EEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY  9 KYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                          KYGqK++kg e+prsYY+Ct+ +Cpvkkkvers+ d+++++i+Y+g+H+he
  Araha.13525s0005.1.p 37 KYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSS-DGQITQIIYKGQHDHE 86
                          9*********************************.***************8 PP
2WRKY106.51.3e-33175233159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vkg+++prsYY+Ct+++C+v+k+ver+++d k+v++tYeg+Hnh+
  Araha.13525s0005.1.p 175 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHD 233
                           59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-213788IPR003657WRKY domain
SMARTSM007741.7E-223787IPR003657WRKY domain
PROSITE profilePS5081119.2333788IPR003657WRKY domain
PfamPF031061.0E-183785IPR003657WRKY domain
SuperFamilySSF1182906.02E-193788IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.1E-37160235IPR003657WRKY domain
SuperFamilySSF1182901.83E-29167235IPR003657WRKY domain
PROSITE profilePS5081137.539170235IPR003657WRKY domain
SMARTSM007741.5E-38175234IPR003657WRKY domain
PfamPF031068.1E-26176233IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0031347Biological Processregulation of defense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAVEDDVSSI RTTTLVAPTR PTITVPQRPP AIETAAKYGQ KPIKGCEYPR SYYKCTHVNC  60
PVKKKVERSS DGQITQIIYK GQHDHERPQN RRGGGGRDST EVGDIHFVGG AGQMMESSDD  120
SGYGKDHEDD NNDDDDDDDD LPASKIRKID GVSTTHRTVT EPKIIVQTKS EVDLLDDGYR  180
WRKYGQKVVK GNPHPRSYYK CTTPNCTVRK HVERASTDAK AVITTYEGKH NHDVPAARNG  240
TAAAAGTSDH HRMRSMSGNN MQQHMSFGNN NNTGQSPVLL RLKEEKITI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-41166236878Probable WRKY transcription factor 4
2lex_A6e-41166236878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.13525s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4262540.0AF426254.1 Arabidopsis thaliana WRKY transcription factor 58 (WRKY58) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884294.11e-168probable WRKY transcription factor 58
SwissprotQ93WU71e-153WRK58_ARATH; Probable WRKY transcription factor 58
TrEMBLD7LAJ31e-166D7LAJ3_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_30000981e-167(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156701416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-153WRKY DNA-binding protein 58
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]