PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1304s0011.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 271aa    MW: 31322.1 Da    PI: 4.5877
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1304s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1101.7e-34181102103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k++e++ d+++++++sw++ g sfvv+d+++f+ ++Lp yFkh+nf+SFvRQLn+YgF+k++ e+         weF ++ F  g++
  Araha.1304s0011.1.p  18 FLTKTFEMVGDPNTNHIVSWNRGGISFVVWDPHSFSATILPLYFKHNNFSSFVRQLNTYGFRKIEAER---------WEFMNEGFLMGQR 98 
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++ikr++s+
  Araha.1304s0011.1.p  99 DLLKSIKRRTSS 110
                          *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.6E-3611102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5214107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.99E-3314107IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.9E-3118107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-191841IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-195668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-196981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MPPPVPMEGL QESGPSPFLT KTFEMVGDPN TNHIVSWNRG GISFVVWDPH SFSATILPLY  60
FKHNNFSSFV RQLNTYGFRK IEAERWEFMN EGFLMGQRDL LKSIKRRTSS SSPPTLNHYQ  120
PDGDDPSVEF PQLQEERHVL MMEISTLRQE EQRARGYIQA MEQRINGAEM KQRHMMSFLR  180
RAVQDPSLLQ QLFEQKKDQE EATMFEQAGL VKTEAVEHLS ELEALALEMQ GYGRQRTDGV  240
ERDLDDGFWE ELLMNNDNSE EEEANVKQDS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-241311212125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100106LKSIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1304s0011.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4467840.0DQ446784.1 Arabidopsis thaliana clone pENTR221-At3g63350 heat shock transcription factor family protein (At3g63350) mRNA, complete cds.
GenBankDQ6531660.0DQ653166.1 Arabidopsis thaliana clone 0000012913_0000009313 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882121.10.0heat stress transcription factor A-7b
SwissprotQ9M1V51e-178HFA7B_ARATH; Heat stress transcription factor A-7b
TrEMBLD7LTQ20.0D7LTQ2_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_50027810.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148361619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G63350.11e-168HSF family protein