PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.12643s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bZIP

Protein Properties

Length: 264aa MW: 28958.1 Da PI: 5.0493

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.12643s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.3	1.2e-11	93	151	5	60
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee...lkkevaklk 60 k e+r NReA r++R++Kka+ + Le++v+ L a N++L k+l++ l++eva+lk Araha.12643s0001.1.p 93 KGEKRPLGNREAVRKYREKKKAKAASLEDEVARLRAVNQQLVKRLQNqatLEDEVARLK 151 6799999************************************9985444788888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.9E-9	89	156	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.967	91	157	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.5E-7	93	140	No hit	No description
Pfam	PF07716	1.4E-14	93	146	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.7E-13	93	157	No hit	No description
CDD	cd14686	4.30E-12	95	148	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071294	Biological Process	cellular response to zinc ion
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MEDGELDFSN QEVFSSSEMG ELPASNCSMD SLFDGLLMDT NAACSCTHTH TCNPTGPEST 60 HTHTCFHVHT KILPDESDER VSIDDTAECC GKKGEKRPLG NREAVRKYRE KKKAKAASLE 120 DEVARLRAVN QQLVKRLQNQ ATLEDEVARL KCLLVDLRGR IDGEIGSFPY QKPMTADIPS 180 FSHMMNPYNV QCDDEVYCPQ NVFGVNSQEG ASINDQGLSD SDFDQLQCMA NQNLSGNGNG 240 SFNNANTSVS NKRKGGHRAS RAV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.12643s0001.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY072386	0.0	AY072386.1 Arabidopsis thaliana putative protein (At4g35040) mRNA, complete cds.
GenBank	AY086153	0.0	AY086153.1 Arabidopsis thaliana clone 21838 mRNA, complete sequence.
GenBank	BT000160	0.0	BT000160.1 Arabidopsis thaliana putative protein (At4g35040) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010437532.1	1e-176	PREDICTED: basic leucine zipper 19
Swissprot	Q8VY76	1e-174	BZP19_ARATH; Basic leucine zipper 19
TrEMBL	A0A178UVU8	1e-172	A0A178UVU8_ARATH; BZIP19
STRING	XP_010437531.1	1e-175	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2036	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35040.1	1e-165	bZIP family protein

Link Out ? help Back to Top
Phytozome	Araha.12643s0001.1.p

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Henriques AR,Farias DDR,Costa de Oliveira A Identification and characterization of the bZIP transcription factor involved in zinc homeostasis in cereals. Genet. Mol. Res., 2017. [PMID:28671251] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]