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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.1219s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 476aa MW: 53292.5 Da PI: 4.1423 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.9 | 3.2e-31 | 304 | 361 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+vkg+++prsYY+Ct ++C+vkk+ver a+++k+v++tY g Hnh+ Araha.1219s0001.1.p 304 NDGYRWRKYGQKVVKGNPNPRSYYKCTNSECKVKKHVERGADNNKLVVTTYDGIHNHP 361 7********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-31 | 288 | 363 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.041 | 298 | 363 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.2E-26 | 298 | 363 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.5E-35 | 303 | 362 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-24 | 304 | 361 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MSDFDENFIE MTSYWAPPSS PSPRTILAML EQTDNGMNPI SEIFPQTNIP RDHDTDQSGQ 60 RSGLRERLAA RIGFSLPTLD TINMSPLDAF FRSSTVPNSP VVAISPGFSP SALLQSPNMV 120 SDSSQIIPPS PATNYGPPEM VETSGEDNAR TMVFNNDLPY QPYNVDLPPL EVFDDIPTEE 180 SFYIPSYEPD VDPIGTPLVA SFESELGDDA HIDIISIEDS ESENENKDED DEDYQYDYED 240 DDQDVYLDEE EEEDEDNVAL DDDAQPSSPK RRRFDQASNN IGATRTSKTQ RVILQMETDE 300 DNPNDGYRWR KYGQKVVKGN PNPRSYYKCT NSECKVKKHV ERGADNNKLV VTTYDGIHNH 360 PSPPARRSNS GSRNRSAGTT MPQNQIDRTS RLARDPPPPA RTPVEMRPFS SMAPQVNLSQ 420 VYMTGLSKLP NIPVYQNPAG FMYRNDEPMM NVMPDGADVY GGIMHRLFVK FGVDI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-24 | 294 | 363 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 8e-24 | 294 | 363 | 8 | 77 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates seed size by negatively regulating the cellularization of syncytial endosperm (PubMed:16293693). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:16293693}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.1219s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY071851 | 0.0 | AY071851.1 Arabidopsis thaliana WRKY transcription factor 10 (WRKY10) mRNA, complete cds. | |||
GenBank | DQ446362 | 0.0 | DQ446362.1 Arabidopsis thaliana clone pENTR221-At1g55600 WRKY family transcription factor (At1g55600) mRNA, complete cds. | |||
GenBank | DQ652899 | 0.0 | DQ652899.1 Arabidopsis thaliana clone 0000019246_0000013269 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002894513.1 | 0.0 | probable WRKY transcription factor 10 | ||||
Swissprot | Q9LG05 | 0.0 | WRK10_ARATH; Probable WRKY transcription factor 10 | ||||
TrEMBL | D7KMZ8 | 0.0 | D7KMZ8_ARALL; WRKY10 | ||||
STRING | fgenesh1_pg.C_scaffold_1004208 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10299 | 17 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55600.1 | 1e-124 | WRKY DNA-binding protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Araha.1219s0001.1.p |