PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.11825s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 140aa MW: 15139.8 Da PI: 10.3396 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 139.5 | 7.1e-44 | 73 | 139 | 4 | 70 |
S1FA 4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 a++eakGlnPGlivllvvgg+llvfl++ny+lyvyaqknlPPrkkkPvskkklkreklkqGv+vPGe Araha.11825s0008.1.p 73 AAAEAKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQGVPVPGE 139 689***************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04689 | 1.2E-38 | 75 | 139 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MRSVVQMLIG EADVPVVPKS RPTMSFSTSH LLLSLQDTLS DCSNTVALNS SRSSSWSVPE 60 HNVIIRSDDD HLAAAEAKGL NPGLIVLLVV GGPLLVFLIA NYVLYVYAQK NLPPRKKKPV 120 SKKKLKREKL KQGVPVPGE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.11825s0008.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF370176 | 1e-101 | AF370176.1 Arabidopsis thaliana unknown protein (At3g53370) mRNA, complete cds. | |||
GenBank | AL132966 | 1e-101 | AL132966.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F4P12. | |||
GenBank | AY059136 | 1e-101 | AY059136.1 Arabidopsis thaliana unknown protein (At3g53370) mRNA, complete cds. | |||
GenBank | AY088845 | 1e-101 | AY088845.1 Arabidopsis thaliana clone 97045 mRNA, complete sequence. | |||
GenBank | CP002686 | 1e-101 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002877915.1 | 2e-40 | L-type lectin-domain containing receptor kinase VIII.1 | ||||
TrEMBL | A0A178V7F8 | 8e-60 | A0A178V7F8_ARATH; Uncharacterized protein | ||||
STRING | Bo00703s130.1 | 3e-54 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2823 | 27 | 69 |
Link Out ? help Back to Top | |
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Phytozome | Araha.11825s0008.1.p |