PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.11664s0011.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 344aa MW: 38794 Da PI: 6.9307 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.1 | 5.4e-12 | 201 | 226 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF H+ Araha.11664s0011.1.p 201 YQPDICKDYKETGYCGYGDSCKFLHD 226 67789********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.57E-9 | 199 | 232 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.4E-8 | 200 | 227 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.009 | 200 | 228 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-13 | 201 | 231 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-9 | 201 | 226 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 5.9E-13 | 264 | 318 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF13920 | 4.6E-8 | 276 | 318 | No hit | No description |
SuperFamily | SSF57850 | 7.57E-13 | 276 | 319 | No hit | No description |
CDD | cd00162 | 3.09E-8 | 277 | 318 | No hit | No description |
PROSITE profile | PS50089 | 10.188 | 277 | 315 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 5.1E-4 | 277 | 314 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 292 | 301 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MSDSGEPKPS QQDESQPQPA VQETQSQQVC TFFKKPTKSK NIRKRAVDTD EEDGDSKSES 60 SILHNLKKVA KPDSKLYFSS GPSKSSTTTG EAAERPVFHY DSSKEIQVQN DSRATATLET 120 ETDFNQDARA IRERVLKKAD ETLKGNKKKA SDEKLYKGIH GYTDHKAGFR REQTISSEKA 180 GGSHGPLRAS AHIRVSARFD YQPDICKDYK ETGYCGYGDS CKFLHDRGDY KPGWQIEKEW 240 EEAEKVRKRN KAMGVEDEDD EADNDSDEDE NALPFACFIC RGPFVDPVVT KCKHYFCEHC 300 ALKHHTKNKK CFVCNQPTMG IFNAAHEIKK RMAEERSKAE EGL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 3e-66 | 28 | 342 | 13 | 327 | RING finger protein 113A |
5z58_M | 3e-66 | 28 | 342 | 13 | 327 | RING finger protein 113A |
6ff4_t | 3e-66 | 28 | 342 | 13 | 327 | RING finger protein 113A |
6ff7_t | 3e-66 | 28 | 342 | 13 | 327 | RING finger protein 113A |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.11664s0011.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493419 | 0.0 | AB493419.1 Arabidopsis thaliana At1g01350 mRNA for hypothetical protein, partial cds, clone: RAAt1g01350. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010474729.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1 | ||||
Refseq | XP_010474731.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1 | ||||
Swissprot | Q8GX84 | 0.0 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | R0GQF7 | 0.0 | R0GQF7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010474729.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11099 | 26 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.11664s0011.1.p |