PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10772s0009.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 342aa    MW: 37536.4 Da    PI: 9.8188
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10772s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-05205227223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                            C+ Cg++F+  ++L+ H+ + H
  Araha.10772s0009.1.p 205 ACSQCGEVFPKLESLELHQAVrH 227
                           6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.808204232IPR007087Zinc finger, C2H2
PROSITE patternPS000280204227IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MALLTFLPEN AEAPQKHKPP SSKRKKRENP TDQTQPRKQK PHKPKKEVPQ KQPSSWDQIK  60
NLLTCKQIEG SRVHDPSKNS QVGPSTTPHL SPSKLGSSCS SICSFRDVAH GNTRVVHRAD  120
HSPDVANSAA PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR  180
KLSGCYECHM IVDPSRYPIS PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN  240
IVEIIFKSSW LKKDSPICQI ERILKVQNTQ RTIQRFEDCR DAVKKKSPVE DNSAVGVSAS  300
GGTFDSVAVN AGVYSNLEEL VVYNPRAILP CFVVIYKVLE S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10772s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529750.0AK352975.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887608.11e-178uncharacterized protein LOC9323672
TrEMBLD7KT601e-177D7KT60_ARALL; Zinc finger family protein
STRINGfgenesh2_kg.2__1849__AT1G75710.11e-178(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-141C2H2-like zinc finger protein