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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.1049s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 1013aa MW: 112780 Da PI: 8.4744 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.5 | 1.9e-07 | 991 | 1012 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ f+++G+Ck+G++C+F H+ Araha.1049s0008.1.p 991 KICK-FYESGYCKRGASCSFWHP 1012 6899.8999***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 5.5E-9 | 105 | 165 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57903 | 5.44E-7 | 106 | 162 | IPR011011 | Zinc finger, FYVE/PHD-type |
PROSITE profile | PS50016 | 8.591 | 110 | 176 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15568 | 3.83E-19 | 112 | 157 | No hit | No description |
SMART | SM00249 | 9.1E-7 | 112 | 158 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 113 | 173 | IPR019786 | Zinc finger, PHD-type, conserved site |
SuperFamily | SSF47592 | 1.74E-20 | 317 | 394 | IPR003121 | SWIB/MDM2 domain |
Gene3D | G3DSA:1.10.245.10 | 3.9E-23 | 317 | 399 | IPR003121 | SWIB/MDM2 domain |
SMART | SM00151 | 5.1E-4 | 320 | 400 | IPR019835 | SWIB domain |
Pfam | PF02201 | 2.5E-13 | 324 | 394 | IPR003121 | SWIB/MDM2 domain |
SMART | SM00719 | 2.6E-48 | 453 | 563 | IPR004343 | Plus-3 domain |
PROSITE profile | PS51360 | 19.718 | 453 | 586 | IPR004343 | Plus-3 domain |
SuperFamily | SSF159042 | 1.44E-26 | 454 | 582 | IPR004343 | Plus-3 domain |
Pfam | PF03126 | 4.2E-18 | 458 | 561 | IPR004343 | Plus-3 domain |
SuperFamily | SSF55277 | 1.15E-16 | 713 | 769 | IPR003169 | GYF domain |
PROSITE profile | PS50829 | 15.717 | 716 | 770 | IPR003169 | GYF domain |
CDD | cd00072 | 1.65E-20 | 716 | 773 | No hit | No description |
SMART | SM00444 | 3.6E-16 | 717 | 772 | IPR003169 | GYF domain |
Pfam | PF02213 | 3.2E-12 | 718 | 762 | IPR003169 | GYF domain |
Gene3D | G3DSA:3.30.1490.40 | 1.3E-17 | 718 | 770 | IPR003169 | GYF domain |
SuperFamily | SSF90229 | 3.79E-6 | 987 | 1011 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.342 | 987 | 1012 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-5 | 991 | 1012 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.6E-5 | 991 | 1011 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1013 aa Download sequence Send to blast |
MDNQQKQLQQ GVPELASSAG REESSVRGID LMRVDQCEEI GVKQVPTLSV PSSTVAGTVA 60 VPVSIEQEVK VVNEAAPVKR KRGRPPRAQA KTPLHIRPPP PPPRKDDKEE DVCFICFDGG 120 DLVLCDRRNC PKAYHPACIK RDEAFFRTTA KWNCGWHICG TCQKASSYMC YTCTFSVCKR 180 CIKDADYVIV RGNMGLCGTC IKPIMLIENI AQGDNEAVKV DFDDKLSWEY LFKVYWLCLK 240 EELSLTVDEL TKANNPWKEV PNTAPNVESR NDHTNNRALD VAVNGTKRRK TSDSPTLPNK 300 LDGKNPNNIL KKAPRDTSWA TKELLEFVSF MKNGDTSVLS QFDVQGLLLD YIKKKNLRDP 360 LQKSQVLCDL MLVKLFGKQR VGHFEMLKLL ESHVLIQEKP KGDKTTNGET THAVPSQIEE 420 DSVHDPAVRD RRRKMRRKTD GRVQNENLDA YAAIDVHNIN LIYLRRKFLE SLLDDINKVH 480 EKVVGTILRI KVSGSDQKVD IHRLVQVVGT SKATASYQLG AKTTDVMLEI LNLDKREVIS 540 IDQLSDQNIT EDECKRLRQS IKCGLNKRLT VGEILKTAAT LQAMRTNEAL EAEILKLNHL 600 RDRAKKLELL KSPEERQRLL QEVPEVHTDP SMDPSNASSE DAGLGTTKQV NHIKAQSKGP 660 QNKGAILNNV GNNAQKKYDA PILRSRNVVH ADKDDCSKVH NNSSNIQETG KDDEESEIWH 720 YRDPTGKTQG PFSMVQLRRW KSSGHFPPYL RIWRAHENQD ESVLLTDALA GRFDKATTLP 780 SSSLLPQEQK PFPHDSGRTG VDVNCLQKNQ TPVNTSATSS SSSTVTAHSN DPKEKQVVAL 840 VVCSGKVEDG NSVCPQSQVS CPASMSVVPG HVVSPDVRQT PGTDQSNAVR ADGNHNTTKT 900 LDDGTNGGSA INGSVQAPNL NQESHFLDFP SPTPNQQKRS SGHSRDRQWL NSSHNSSFNN 960 SHNNRQWPYS NSHGYDHGSG SYAAHPPKGL KICKFYESGY CKRGASCSFW HP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4gnd_A | 1e-15 | 110 | 179 | 15 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gnd_C | 1e-15 | 110 | 179 | 15 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gne_A | 1e-15 | 110 | 179 | 15 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gnf_A | 1e-15 | 110 | 179 | 15 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gng_A | 1e-15 | 110 | 179 | 15 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gng_D | 1e-15 | 110 | 179 | 15 | 81 | Histone-lysine N-methyltransferase NSD3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.1049s0008.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL132980 | 0.0 | AL132980.3 Arabidopsis thaliana DNA chromosome 3, BAC clone F24M12. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020880063.1 | 0.0 | zinc finger CCCH domain-containing protein 44 | ||||
Swissprot | Q9SD34 | 0.0 | C3H44_ARATH; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | D7LTN2 | 0.0 | D7LTN2_ARALL; Uncharacterized protein | ||||
STRING | scaffold_502165.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7787 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51120.1 | 0.0 | DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding |
Link Out ? help Back to Top | |
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Phytozome | Araha.1049s0008.1.p |