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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.10230s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HSF | ||||||||
Protein Properties | Length: 256aa MW: 29378.1 Da PI: 10.6165 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 42.7 | 1.6e-13 | 147 | 238 | 4 | 101 |
HHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHST.T--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 4 kklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFk.hsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 + + ++++d++ +++isws++++sfv+ ++++f ++ +++ F s f+ F+ L+ YgF++ k++++ eF +++F +g+ Araha.10230s0008.1.p 147 NDNVQLVDDPSSDSIISWSKKSKSFVIRNQKKFIRRKIHSRFPfSSTFEKFMSMLKYYGFSERKRSDGL-------LEFGNENFVRGQP 228 567899***************************999999999735789****************99987.......************* PP XXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkk 101 l++++++k+ Araha.10230s0008.1.p 229 MLMKQMHQKA 238 *****99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.9E-12 | 140 | 237 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.9E-17 | 150 | 232 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 5.0E-14 | 151 | 237 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.53E-15 | 151 | 236 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MVQHNPRLFC VSQRGIRWKR ISHKDVADQS CKNHRKKTFA DSSHGVEVEP GKPFTLKATE 60 AMGIRRLHLS HATLGGLGNE TVRHILVCNI GDRRPLYLCI LSPGKVDSCQ LNLDFEEADD 120 VIFSVIGPLS IHITGYFLAT PTAFRLNDNV QLVDDPSSDS IISWSKKSKS FVIRNQKKFI 180 RRKIHSRFPF SSTFEKFMSM LKYYGFSERK RSDGLLEFGN ENFVRGQPML MKQMHQKAMM 240 KRINKDLTVF KAERR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.10230s0008.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5067 | 14 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G19630.1 | 2e-11 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.10230s0008.1.p |