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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.1020s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | CPP | ||||||||
Protein Properties | Length: 689aa MW: 75739.2 Da PI: 6.1491 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.6 | 4e-16 | 392 | 430 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk Araha.1020s0004.1.p 392 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP 430 689**********************************96 PP | |||||||
2 | TCR | 51.7 | 1.7e-16 | 477 | 515 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+C+N Araha.1020s0004.1.p 477 RHKRGCNCKKSNCLKKYCECYQGGVGCSMNCRCEGCQNV 515 589***********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.3E-19 | 391 | 432 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.436 | 392 | 517 | IPR005172 | CRC domain |
Pfam | PF03638 | 6.6E-12 | 394 | 429 | IPR005172 | CRC domain |
SMART | SM01114 | 3.2E-17 | 477 | 518 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.1E-11 | 479 | 514 | IPR005172 | CRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 689 aa Download sequence Send to blast |
NPTSQIGTST PKSKFEDSPV FNYISNLSPI ESVKSISTAQ TFSSLSFTSP PPVFTSPHVN 60 SHRESRFFRC HNSVDHAKHL ESLDGSAVKE EVVVPVIEDL NKEASLEDEE ETSVETAYEL 120 PQILKFSSQT PEDSDSPCTE DIVIEASSDP PRGDGGSSSE DVKMGVENML VVREEKDTPD 180 CGRLISDATE LLVFRSPNDS EAFRCLVDKI SSSERRFCAG VKSTKRPKIT EDVPANGSSN 240 ENEPLTVLPN ESVFNLHRGG MRRRCLDFEM PGKRKKDIAD DHQSVCDNNV AGESSSRCVV 300 PGIGLHLNAV AMSAKDININ LIHDYSISGE IQKSFSGSTI PIHSQDTVQE TSDQAENEPV 360 EEIPKALEFP SLNLGSLKKK MRKSEQAGEG ESCKRCNCKK SKCLKLYCEC FAAGVYCIEP 420 CSCIDCFNKP IHEETVLATR KQIESRNPLA FAPKVIRSAD SVMEAGDDAS KTPASARHKR 480 GCNCKKSNCL KKYCECYQGG VGCSMNCRCE GCQNVFGRKE GSLLVIMESK LEEDQETYEK 540 RIAKIQHNIE VSKEVEQNPS SDQPSTPLPP YRHLVVHQPF LSKNRLPPTQ FFLGTGSSSF 600 RKPDSGLTQS QNEKKPLETV AEDKTEIMPE ILLNSPIANI KAISPNSKRV SPPQPGSSES 660 GSILRRRGNG RKLILRSIPA FPSLNPNQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 3e-16 | 396 | 515 | 14 | 121 | Protein lin-54 homolog |
5fd3_B | 3e-16 | 396 | 515 | 14 | 121 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 261 | 275 | RRRCLDFEMPGKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00370 | DAP | Transfer from AT3G22780 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.1020s0004.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF204059 | 0.0 | AF204059.1 Arabidopsis thaliana CXC domain protein TSO1 (TSO1) mRNA, complete cds. | |||
GenBank | AF206324 | 0.0 | AF206324.1 Arabidopsis thaliana putative DNA binding protein (tso1) mRNA, tso1-3 allele, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020886693.1 | 0.0 | CRC domain-containing protein TSO1 | ||||
Swissprot | Q9LUI3 | 0.0 | TSO1_ARATH; CRC domain-containing protein TSO1 | ||||
TrEMBL | D7L2F3 | 0.0 | D7L2F3_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.3__2490__AT3G22780.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1467 | 28 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 0.0 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.1020s0004.1.p |
Publications ? help Back to Top | |||
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