PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10095s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 322aa    MW: 35984 Da    PI: 4.7774
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10095s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.92.4e-15124175155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  Araha.10095s0001.1.p 124 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYLKELE 175
                           79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.20E-14122179No hitNo description
Gene3DG3DSA:4.10.280.105.7E-14123179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.418123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-17123186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-12124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-11129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.642245321IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPLDTK NNIKLGQGQE PNGFASYNYN  60
GKSGDNSDDY NYNEEDLQWP RDLPYGSAVE TENQPPPSDV AAGGGRRKRR RTRSIKNKDE  120
IENQRMTHIA VERNRRKQMN EYLAVLRSLM PPSYAQRGDQ ASIVGGAINY LKELEHHLQS  180
MEPPVKTTVE DAGAGCDQIN TTAASSSGPF SDFFAFPQYS NRPTSAAAAE GMAEIEVTMV  240
ESHASLKILA KKRPRQLLKL VSSIQSLRLT LLHLNVTTRD DSVLYSISVK VEEGSQLNTV  300
EDIAAAVNQI LRRIEEESSF S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106110RKRRR
2106111RKRRRT
3124135RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10095s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4597710.0AJ459771.1 Arabidopsis thaliana mRNA for basic-helix-loop-helix transcription factor (bHLH096 gene).
GenBankBT0038710.0BT003871.1 Arabidopsis thaliana clone RAFL15-42-L08 (R20946) putative bHLH protein (At1g72210) mRNA, complete cds.
GenBankBT0060860.0BT006086.1 Arabidopsis thaliana clone U20946 putative bHLH protein (At1g72210) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177366.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ9C7T40.0BH096_ARATH; Transcription factor bHLH96
TrEMBLR0IFC40.0R0IFC4_9BRAS; Uncharacterized protein
STRINGAT1G72210.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]