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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Araha.0947s0001.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
AP2 |
Protein Properties |
Length: 448aa MW: 49249.1 Da PI: 7.0053 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Araha.0947s0001.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 53.6 | 5.5e-17 | 151 | 200 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Araha.0947s0001.1.p 151 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 200
78*******************......55************************997 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 448 aa
Download sequence Send
to blast |
MLDLNLDADS PESTQYGGDS YLDRQTSDGS AGNRVEESGT STSSVINADG DEDSCSTRAF 60 TLSFDILKVG SSSGGDETSV AGVTKEFFPV SGDCGHLRDV EGSSSRSWID LSFDRFGDGE 120 TKLVTPVPVP TPAPVPTQVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG 180 FDTAHAAARA YDRAAIKFRG VDADINFTLG DYEEDMKQVQ NLSKEEFVHI LRRQSTGFSR 240 GSSKYRGVTL HKCGRWEARM GQFLGKKAYD KAAINTNGRE AVTNFEMSSY QNEINSETNN 300 EGGHDKLDLN LGISLSSGNA PKQNGRLFHF PSNTYETQRG VSLRIDNEYM GKPVNTPLPY 360 GSSDHRVYWN GACPSYNNPI EGRATDKRSE AEGMMSNWGW QRPGQTSAVR PQPPPLFSVA 420 AASSGFSHFR PQPPNDNATR GLFYPQP*
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF325074 | 0.0 | AF325074.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds. |
GenBank | AY050815 | 0.0 | AY050815.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds. |
GenBank | AY091418 | 0.0 | AY091418.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds. |