PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0550s0009.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARR-B
Protein Properties Length: 1037aa    MW: 115820 Da    PI: 6.9721
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0550s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like73.33.6e-233284255
              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         +r +Wt eLH++Fv+a +qL G +kA P +i  lm+v+gL + +v+SHLQkYRl
  Araha.0550s0009.1.p 32 KRTVWTVELHQKFVNAFQQL-GLDKASPEQIHALMNVEGLPVINVASHLQKYRL 84
                         699*****************.********************************7 PP
2G2-like83.12.9e-26262314355
              G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          r++W++eLH++F++a++qLGG+ekA+Pk+il +m+v+gLt+ +v+ HLQkYR 
  Araha.0550s0009.1.p 262 RVVWSHELHQKFLNAIDQLGGNEKAIPKKILAVMNVEGLTRLNVATHLQKYRQ 314
                          99**************************************************5 PP
3G2-like90.81.2e-28596649155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr++W++eLH++Fv+av+qL G +kA+Pk+il+lm+++gLt+e+v+SHLQkYRl
  Araha.0550s0009.1.p 596 KPRVVWSQELHQKFVSAVQQL-GLDKAVPKKILDLMSIEGLTRENVASHLQKYRL 649
                          79*******************.********************************8 PP
4Response_reg661.7e-224155221109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl vdD+p+ ++ l+++l + +y +v+ + ++++alell+e+   +Dl++ D+emp+ dG++ll+   e  ++lp+i+++ah++ + + +
  Araha.0550s0009.1.p 415 VLAVDDNPTCLRKLEELLLRCKY-HVTKTMESRKALELLRENSnmFDLVISDVEMPDTDGFKLLEIGLE--MDLPVIMLSAHSDYDSVMK 501
                          799********************.***************999999******************985344..57***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           +  Ga d+l+Kp+  +el +
  Araha.0550s0009.1.p 502 GIIHGACDYLVKPVGLKELQN 522
                          ***************999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.1572887IPR017930Myb domain
SuperFamilySSF466891.77E-152989IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-232988IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-193285IPR006447Myb domain, plants
PROSITE profilePS5129411.266257317IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-23257314IPR009057Homeodomain-like
SuperFamilySSF466891.16E-15260315IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-22262314IPR006447Myb domain, plants
SuperFamilySSF521724.98E-30412530IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.5E-33412558No hitNo description
SMARTSM004481.4E-26413524IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011037.55414528IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.3E-20415522IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.52E-19437527No hitNo description
PROSITE profilePS5129411.612593652IPR017930Myb domain
SuperFamilySSF466891.61E-20593653IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-29594654IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-25596649IPR006447Myb domain, plants
PfamPF002495.3E-8598648IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1037 aa     Download sequence    Send to blast
LSKKQNEDAS GRKEEDGKGN EHNGMESCTR MKRTVWTVEL HQKFVNAFQQ LGLDKASPEQ  60
IHALMNVEGL PVINVASHLQ KYRLFLKKIY EGQQLDMATI QLLLSAGSHF PQTPWTNHCS  120
SFIQQGHHQN SSNSSETYHT TLSPRVQKVN TFQPSSSPLK PLLFPKSNIS AFKEDFKSIK  180
EPAIVGDSSL DSSKPRNSFQ TASKFPKTDP CTGSYIIEIM TEPYYGKSSR RHSNFSAYMG  240
DFKSIKDPEI VQESRTRKNH GRVVWSHELH QKFLNAIDQL GGNEKAIPKK ILAVMNVEGL  300
TRLNVATHLQ KYRQCCSAEA QQLNMATRKL PSSEHLPQSP STNHHSSLSP RVQDVNIRLW  360
SSSPKRQDQI LVYVLFSFEN DNGREETTCR RIASTMELGS TEDGRHDKFP VGMRVLAVDD  420
NPTCLRKLEE LLLRCKYHVT KTMESRKALE LLRENSNMFD LVISDVEMPD TDGFKLLEIG  480
LEMDLPVIML SAHSDYDSVM KGIIHGACDY LVKPVGLKEL QNIWHHVVKK NIKSYAKNIG  540
PSRQLLPPSE SNLVPSASKK RKEKASDSGD EDDSDREEDD GEGSEQDGEE SGTRKKPRVV  600
WSQELHQKFV SAVQQLGLDK AVPKKILDLM SIEGLTRENV ASHLQKYRLY LKKIDEGQQQ  660
NMTPDAFGTR DSSYFQMAQL DGLRDFTATR QIPSSGLLSR SHLTKLQPPM YSSINLQGMN  720
SSSFIQQGHH HNSSNSANPF GTYHTTLSPR IQNVNLLQRT SSPLETLQFP RSKSYIGDFK  780
GIGDRAVGGS FLDSCMPFGS SSTSLPSAST NTLMLQANYT QPLHIASDGN QPCIEGTPSN  840
SASPNISFQG LSRFPSHSWQ GNLNTTRFPP SSLPLNQAFL PDQVTCAGNN LGDCTSLVSA  900
GNPGGEMQCE PQLLGGFMQN MNPLDGQKWE QQNSMLNNPF GNIEYPLSAD NMVFRDNNAT  960
RNKGLDESLM NPIDNSQEYV GKATTMLDPE MKSGKPENDN QHDVFDDIMN EMMKQEENNG  1020
MVSVATRFGF DSFPPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-22256654163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00057PBMTransfer from AT5G58080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0550s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240290.0AB024029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L19.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866248.10.0two-component response regulator ARR18 isoform X2
SwissprotQ9FGT70.0ARR18_ARATH; Two-component response regulator ARR18
TrEMBLD7MPK50.0D7MPK5_ARALL; Two-component response regulator
STRINGAl_scaffold_0008_22760.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142821823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.10.0response regulator 18