PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0321s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family FAR1
Protein Properties Length: 359aa    MW: 41442.2 Da    PI: 8.1052
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0321s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR189.16.2e-2834138190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...............tekerrtraetrtgCkaklkvkkekdgk 75 
                          +fY+eYAk+vGF++ +++s++s+++g++++++fvC+++g++++ek++               +++ r + ++++t+Cka+l+vk+++dg+
  Araha.0321s0007.1.p  34 EFYKEYAKSVGFTTIIKASRRSRMTGKFIDAKFVCTRYGSKKTEKEDigtglgtdgfnipqaRKRGRINWSSSKTDCKACLHVKRRQDGR 123
                          6**********************************************************9988888999********************* PP

                 FAR1  76 wevtkleleHnHela 90 
                          w++ +l +eHnHe++
  Araha.0321s0007.1.p 124 WVIRSLIKEHNHEIF 138
                          ************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.2E-2634138IPR004330FAR1 DNA binding domain
PfamPF105518.7E-19227308IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MPSGECSNVQ LDDDRISLEI DEGREFESKE EAFEFYKEYA KSVGFTTIIK ASRRSRMTGK  60
FIDAKFVCTR YGSKKTEKED IGTGLGTDGF NIPQARKRGR INWSSSKTDC KACLHVKRRQ  120
DGRWVIRSLI KEHNHEIFTG QADSLRDLGG RRKLEKLNGD IVKEVKSRKQ LALEDGDVER  180
LLNFFMDMQV ENPFFFYAID LSEEQSLRNV FWVDAKGRLD YTCFCDVVSF DTTFIKNEYK  240
LPLVAFTGVN HHGQFLLLGC GLISTGESKY GFVWLFRAWL KAMHGCQPRV ILTKHDRTLK  300
EAVLEVVKFN SRNSVWLDDI SKFVDCSHIR RQSSEDNNKM LIHLRENHME DNICEVVK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149156GRRKLEKL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0321s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0216370.0AL021637.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F18F4 (ESSA project).
GenBankAL1615520.0AL161552.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 52.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872705.10.0protein FAR1-RELATED SEQUENCE 1 isoform X1
RefseqXP_020872706.10.0protein FAR1-RELATED SEQUENCE 1 isoform X2
RefseqXP_020872707.10.0protein FAR1-RELATED SEQUENCE 1 isoform X3
SwissprotQ5UBY21e-127FRS1_ARATH; Protein FAR1-RELATED SEQUENCE 1
TrEMBLR0GY700.0R0GY70_9BRAS; Uncharacterized protein
STRINGBostr.30275s0471.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19990.20.0FAR1-related sequence 1