PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0152s0012.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 426aa    MW: 46805.3 Da    PI: 7.9109
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0152s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.51.2e-094871326
                         S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                         ++ C ++ rtG C++G++C+F+H+
  Araha.0152s0012.1.p 48 EPDCAYYIRTGLCRFGSTCRFNHP 71
                         789********************8 PP
2zf-CCCH37.34.4e-1293117327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C f+++tGtCk+G +CkF+H++
  Araha.0152s0012.1.p  93 QPECEFYLKTGTCKFGVTCKFHHPR 117
                          799********************96 PP
3zf-CCCH37.54e-12139163327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +  C++f+rtG+Ck+G++CkF+H++
  Araha.0152s0012.1.p 139 EDDCSYFLRTGHCKFGGTCKFNHPQ 163
                          578********************97 PP
4zf-CCCH375.7e-12290316127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+f+++tG Ck+G  CkF+H++
  Araha.0152s0012.1.p 290 PGQPECQFYMKTGDCKFGTVCKFHHPR 316
                          5789*********************96 PP
5zf-CCCH37.73.5e-12337362227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          +++lC f++r+G+Ck+G++CkF H++
  Araha.0152s0012.1.p 337 GEPLCVFYSRYGICKFGPSCKFDHPM 362
                          789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.8684573IPR000571Zinc finger, CCCH-type
SMARTSM003560.00674572IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-64871IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-54973IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-45172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.21190118IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-590117IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-993117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-693119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-496117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.305136164IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-5136163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6137164IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9139163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4142162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22289317IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5289316IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8291316IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6293318IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4295317IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915335363IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-7335362IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-9337362IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5338362IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4340360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MDFDSRVPIS RESTSLSPLL NQDAMWQMNL GSDDTMGLDG SYPERHGEPD CAYYIRTGLC  60
RFGSTCRFNH PHDRKLVIAT ARIKGEHPER IGQPECEFYL KTGTCKFGVT CKFHHPRNKA  120
GIDGSVSVNV LGYPLRPNED DCSYFLRTGH CKFGGTCKFN HPQTQSTNLM VSLRGSPVYS  180
ALQPPTGKQS YSWPRTSFVA NPPRWQDPSS FASLILPQGG VVSVQGWNAY GLGSLSPSGS  240
DQNYRNQQHN DAKESSGSQG GLFSSGFHSG NSVPLGFYAL PRENVFPERP GQPECQFYMK  300
TGDCKFGTVC KFHHPRDRQT PAPDCVLSSV GLPLRQGEPL CVFYSRYGIC KFGPSCKFDH  360
PMRVFTYNNN DASPSPSSSS HQETAITTQL RNLLVSASVE ATPTTLPSSV SETTSAKETI  420
VDAQH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0152s0012.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1388720.0AF138872.1 Arabidopsis thaliana zinc finger protein 3 (ZFN3) mRNA, complete cds.
GenBankAY0846340.0AY084634.1 Arabidopsis thaliana clone 113763 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878456.10.0zinc finger CCCH domain-containing protein 57
SwissprotQ8L7N80.0C3H57_ARATH; Zinc finger CCCH domain-containing protein 57
TrEMBLR0H7930.0R0H793_9BRAS; Uncharacterized protein
STRINGBostr.2902s0390.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.10.0zinc finger nuclease 3
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Xie W, et al.
    Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach.
    Front Plant Sci, 2015. 6: p. 829
    [PMID:26528302]