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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.0121s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Trihelix | ||||||||
Protein Properties | Length: 494aa MW: 56472 Da PI: 7.9911 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 105.8 | 3e-33 | 334 | 428 | 1 | 86 |
trihelix 1 rWtkqevlaLiearr..........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 rW+k+evlaLi++rr +++++l++++++ plWe++skkm e g++rs+k+Ckekwen+nk+++k+k+ +kkr + +s+tcp Araha.0121s0001.1.p 334 RWPKDEVLALINIRRsisnmndddhKDDNTLSTSSKAVPLWERISKKMLEIGYQRSAKRCKEKWENINKYFRKTKDVNKKR-PLDSRTCP 422 8*********************9999999***************************************************8.9******* PP trihelix 81 yfdqle 86 yf+ql+ Araha.0121s0001.1.p 423 YFHQLT 428 ****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.5E-19 | 333 | 429 | No hit | No description |
CDD | cd12203 | 2.10E-25 | 333 | 408 | No hit | No description |
PROSITE profile | PS50090 | 6.969 | 334 | 401 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001158 | Molecular Function | enhancer sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence Send to blast |
MIVRRNPVII RRNPLAEVGF KRSPQECKEK FEEEERRYFN SNNNNNNTND HPHIGNYNNN 60 KGNNYRVFSE VEEFYDVSSE VGDNQNKRNN SVEAKGNVGE TVTGQDLMEE DKLRDHDQGQ 120 VEEASMENKI NSIEVGKVGN VEEDAKSSSS SSLMMIIKEK KKRKKKKQKE RFGVLKGFCE 180 GLVRNMISQQ EEMHKKILED MVKKEEEKIA REEAWKKQDI ERVNKEVEIR AQEQAMASDR 240 NTNIIKFISK FTDHDLDVVQ NPTSPSQDSS SLALPKTQGR RKFQTISSLL PQTLTPHNPL 300 TNDKSLEPTK TLKTKTQTPK LPKSDDKSDD LGKRWPKDEV LALINIRRSI SNMNDDDHKD 360 DNTLSTSSKA VPLWERISKK MLEIGYQRSA KRCKEKWENI NKYFRKTKDV NKKRPLDSRT 420 CPYFHQLTAL YSQPSTGTTT TATTTSAGDL ETRPDEENRV GSEDNDISVA MHVDGDGAGD 480 KSNVQFSGFD LEF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 164 | KKRKK |
2 | 160 | 166 | KKRKKKK |
3 | 161 | 169 | KRKKKKQKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00011 | PBM | Transfer from AT5G28300 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.0121s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF386963 | 0.0 | AF386963.1 Arabidopsis thaliana Unknown protein mRNA, complete cds. | |||
GenBank | AY081484 | 0.0 | AY081484.1 Arabidopsis thaliana unknown protein mRNA, complete cds. | |||
GenBank | BT000461 | 0.0 | BT000461.1 Arabidopsis thaliana Unknown protein mRNA, complete cds. | |||
GenBank | BT008389 | 0.0 | BT008389.1 Arabidopsis thaliana At5g28300 gene, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | T8M17 | 0.0 | AF296835.1 Arabidopsis thaliana BAC T8M17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020878175.1 | 0.0 | trihelix transcription factor GTL2 | ||||
Swissprot | Q8H181 | 0.0 | GTL2_ARATH; Trihelix transcription factor GTL2 | ||||
TrEMBL | D7M6U6 | 0.0 | D7M6U6_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.6__2781__AT5G28300.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8268 | 28 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28300.1 | 0.0 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.0121s0001.1.p |
Publications ? help Back to Top | |||
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