PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0118s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 440aa    MW: 50055.7 Da    PI: 6.5195
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0118s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11265307754
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            Er+RRd+iN+a+  Lr ++Pk      +Kl+K+ i   Av+YI++L
  Araha.0118s0003.1.p 265 HSERKRRDKINQAMYGLRAVVPKI-----TKLNKIGIFSDAVDYINEL 307
                          57*********************7.....7***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.4E-1412158IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.36E-14257320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.94E-11257312No hitNo description
PROSITE profilePS5088814.557258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-12264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9265307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-13265322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MMMMRGGERV KEFLRPFVDS RTWDLCVIWK LGDDPSRFIE WVGCCCSGCY IDKNIKLENS  60
EEETGRRNKA SFCRDEHNKH RIRSLACEAL SHFPLFMPLY PGIHGEVVMS KSPKWLVNSG  120
SKMDMFSTRV LVPVSDGLVE LFSFDMKPFD ESMVHLIMSR CTTFFEPFPE QRLPFRIIPR  180
AEESISSGVN LSFEGGGSSS VSNPSSETQN LFGSYPNARC VEILREEQAP CLVMNKEKDV  240
EVQNANDSKA NKRLPAENFK SKNLHSERKR RDKINQAMYG LRAVVPKITK LNKIGIFSDA  300
VDYINELLAE KQKLEDELKG INEMECKEIA AEEQSAIADP EAEKVSSKIN KKVKKNEVKL  360
EVHEIGERDF LIRVVQEHKQ DGFKRLIEAV DLCELEIIDV NFTRLDLTVM TVLNVKANKD  420
GITSGILRDL LLKMMITSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266271ERKRRD
2267272RKRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0118s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293750.0AK229375.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor bHLH090, complete cds, clone: RAFL16-62-E05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870794.10.0transcription factor bHLH90
SwissprotQ0WNR20.0BH090_ARATH; Transcription factor bHLH90
TrEMBLD7KLG20.0D7KLG2_ARALL; DNA binding protein
STRINGfgenesh2_kg.1__1138__AT1G10610.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.10.0bHLH family protein