PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.0049s0014.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | LBD | ||||||||
Protein Properties | Length: 203aa MW: 22959.8 Da PI: 10.0199 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 110.3 | 1.4e-34 | 22 | 113 | 1 | 92 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 aCa+Ck++r+kC+++C+l+pyfpa+++k+f++vhk+FG+snv+k++++++ee+r+++ +sl++eA +r++dPv G++g ++++ ++l+ Araha.0049s0014.1.p 22 ACASCKHQRKKCNNECILSPYFPARKTKEFQAVHKVFGVSNVQKMVRTVREEDRTKLSDSLTWEALWRQKDPVLGSYGEYRRICEELKLY 111 7***********************************************************************************999987 PP DUF260 91 ka 92 k+ Araha.0049s0014.1.p 112 KS 113 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.17 | 21 | 121 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.1E-32 | 22 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MMQRNNPTTT TSISNNSSSH QACASCKHQR KKCNNECILS PYFPARKTKE FQAVHKVFGV 60 SNVQKMVRTV REEDRTKLSD SLTWEALWRQ KDPVLGSYGE YRRICEELKL YKSLVHNQPL 120 IGWDTNQRVF SNNSNNKNGL AMNSSGSGGL SVNNNGVGVN REIVNVGYTS RNVQGGWENL 180 KQDQRQQCYA VINGFKQHYV PL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-18 | 23 | 99 | 12 | 88 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-18 | 23 | 99 | 12 | 88 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.0049s0014.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473865 | 0.0 | AB473865.1 Arabidopsis thaliana ASL32 mRNA for ASYMMETRIC LEAVES2-like 32 protein, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F9P14 | 0.0 | AC025290.3 Sequence of BAC F9P14 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002892332.1 | 1e-133 | LOB domain-containing protein 2 | ||||
Refseq | XP_020869821.1 | 1e-133 | LOB domain-containing protein 2 | ||||
Swissprot | Q9LNB9 | 1e-122 | LBD2_ARATH; LOB domain-containing protein 2 | ||||
TrEMBL | D7KG18 | 1e-132 | D7KG18_ARALL; Uncharacterized protein | ||||
STRING | scaffold_100624.1 | 1e-133 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10539 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 1e-103 | LOB domain-containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Araha.0049s0014.1.p |