PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.0049s0014.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 203aa MW: 22959.8 Da PI: 10.0199

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.0049s0014.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	110.3	1.4e-34	22	113	1	92
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 aCa+Ck++r+kC+++C+l+pyfpa+++k+f++vhk+FG+snv+k++++++ee+r+++ +sl++eA +r++dPv G++g ++++ ++l+ Araha.0049s0014.1.p 22 ACASCKHQRKKCNNECILSPYFPARKTKEFQAVHKVFGVSNVQKMVRTVREEDRTKLSDSLTWEALWRQKDPVLGSYGEYRRICEELKLY 111 7***********************************************************************************999987 PP DUF260 91 ka 92 k+ Araha.0049s0014.1.p 112 KS 113 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.17	21	121	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.1E-32	22	112	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MMQRNNPTTT TSISNNSSSH QACASCKHQR KKCNNECILS PYFPARKTKE FQAVHKVFGV 60 SNVQKMVRTV REEDRTKLSD SLTWEALWRQ KDPVLGSYGE YRRICEELKL YKSLVHNQPL 120 IGWDTNQRVF SNNSNNKNGL AMNSSGSGGL SVNNNGVGVN REIVNVGYTS RNVQGGWENL 180 KQDQRQQCYA VINGFKQHYV PL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-18	23	99	12	88	LOB family transfactor Ramosa2.1
5ly0_B	6e-18	23	99	12	88	LOB family transfactor Ramosa2.1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00128	DAP	Transfer from AT1G06280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.0049s0014.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473865	0.0	AB473865.1 Arabidopsis thaliana ASL32 mRNA for ASYMMETRIC LEAVES2-like 32 protein, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F9P14	0.0	AC025290.3 Sequence of BAC F9P14 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002892332.1	1e-133	LOB domain-containing protein 2
Refseq	XP_020869821.1	1e-133	LOB domain-containing protein 2
Swissprot	Q9LNB9	1e-122	LBD2_ARATH; LOB domain-containing protein 2
TrEMBL	D7KG18	1e-132	D7KG18_ARALL; Uncharacterized protein
STRING	scaffold_100624.1	1e-133	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10539	26	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	1e-103	LOB domain-containing protein 2

Link Out ? help Back to Top
Phytozome	Araha.0049s0014.1.p