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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Aradu.ZM6VG |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family |
Whirly |
| Protein Properties |
Length: 233aa MW: 25562.3 Da PI: 9.5503 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aradu.ZM6VG | genome | NCGR_PGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 197.3 | 2.2e-61 | 58 | 194 | 1 | 137 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkveP 98
svyk+kaa+++ + +ptf++ldsg+++++r+G++++ ++ +++erkydWe+kq+falsatev++l+++++++sceffhdp++ +sn+G+vrk+l+++P
Aradu.ZM6VG 58 SVYKGKAAFSLSPCLPTFTKLDSGAVVVDRRGSMMMIFMHSIGERKYDWENKQRFALSATEVGSLISMGPQDSCEFFHDPSMLSSNAGQVRKSLSIKP 155
79************************************************************************************************ PP
Whirly 99 lpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
++ G+fv+l+v n+l+++++++svPv+ aefav++++
Aradu.ZM6VG 156 HASSNGYFVSLTVVNNLLNTKDYLSVPVTTAEFAVMKTA 194
*************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 233 aa
Download sequence Send
to blast |
MLKLSRLLPS ISGSSPRLLE PLSFTKPDPR DSAAFSTATN NKYAAKGYTS NRIFAPYSVY 60
KGKAAFSLSP CLPTFTKLDS GAVVVDRRGS MMMIFMHSIG ERKYDWENKQ RFALSATEVG 120
SLISMGPQDS CEFFHDPSML SSNAGQVRKS LSIKPHASSN GYFVSLTVVN NLLNTKDYLS 180
VPVTTAEFAV MKTACSFALP HIMGWDRMTH QSGGTVGLQS KVEPPALDLE WDK
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4kop_A | 6e-86 | 50 | 209 | 8 | 167 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_B | 6e-86 | 50 | 209 | 8 | 167 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_C | 6e-86 | 50 | 209 | 8 | 167 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_D | 6e-86 | 50 | 209 | 8 | 167 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
